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4H9M
Biol. Unit 1
Info
Asym.Unit (291 KB)
Biol.Unit 1 (832 KB)
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(1)
Title
:
THE FIRST JACK BEAN UREASE (CANAVALIA ENSIFORMIS) COMPLEX OBTAINED AT 1.52 RESOLUTION
Authors
:
A. Begum, M. I. Choudhary, C. Betzel
Date
:
24 Sep 12 (Deposition) - 24 Oct 12 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.52
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Jack Bean, Canavalia Ensiformis, Acetohydroxamic Acid, Hydrolase, Metal-Binding, Nickel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Begum, M. I. Choudhary, C. Betzel
The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained At 1. 52 Resolution
To Be Published
[
close entry info
]
Hetero Components
(4, 114)
Info
All Hetero Components
1a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
1b: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEb)
1c: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEc)
1d: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEd)
1e: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEe)
1f: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEf)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: ACETOHYDROXAMIC ACID (HAEa)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
4b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
5a: NICKEL (II) ION (NIa)
5b: NICKEL (II) ION (NIb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CME
18
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
2
EDO
87
Ligand/Ion
1,2-ETHANEDIOL
3
HAE
3
Ligand/Ion
ACETOHYDROXAMIC ACID
4
KCX
6
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
NI
-1
Ligand/Ion
NICKEL (II) ION
[
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Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:407 , HIS A:409 , KCX A:490 , ASP A:633 , NI A:902 , HAE A:929
BINDING SITE FOR RESIDUE NI A 901
02
AC2
SOFTWARE
KCX A:490 , HIS A:492 , HIS A:519 , HIS A:545 , GLY A:550 , NI A:901 , HAE A:929
BINDING SITE FOR RESIDUE NI A 902
03
AC3
SOFTWARE
LEU A:111 , PHE A:112 , GLY A:113 , SER A:114 , LEU A:115 , HOH A:1235 , HOH A:1643
BINDING SITE FOR RESIDUE EDO A 903
04
AC4
SOFTWARE
ALA A:80 , VAL A:81 , GLN A:82 , THR A:740 , GLU A:742 , HOH A:1644
BINDING SITE FOR RESIDUE EDO A 904
05
AC5
SOFTWARE
ILE A:154 , SER A:209 , VAL A:210 , THR A:211 , EDO A:919 , HOH A:1509 , HOH A:1657
BINDING SITE FOR RESIDUE EDO A 905
06
AC6
SOFTWARE
ARG A:6 , LYS A:10 , ASN A:735 , HOH A:1180 , HOH A:1196
BINDING SITE FOR RESIDUE EDO A 906
07
AC7
SOFTWARE
PRO A:72 , ARG A:835 , HOH A:1100 , HOH A:1396
BINDING SITE FOR RESIDUE EDO A 907
08
AC8
SOFTWARE
PRO A:373 , MET A:376 , ASN A:377 , GLY A:378 , VAL A:379 , HOH A:1628
BINDING SITE FOR RESIDUE EDO A 908
09
AC9
SOFTWARE
ASN A:225 , KCX A:247 , PRO A:499 , HOH A:1110 , HOH A:1303 , HOH A:1741
BINDING SITE FOR RESIDUE EDO A 909
10
BC1
SOFTWARE
GLY A:362 , LEU A:702 , GLY A:723 , ALA A:759 , LEU A:760 , ARG A:783 , HOH A:1314 , HOH A:1418 , HOH A:1595 , HOH A:1603
BINDING SITE FOR RESIDUE EDO A 910
11
BC2
SOFTWARE
THR A:350 , HOH A:1151 , HOH A:1514 , HOH A:1631 , HOH A:1685 , HOH A:1736
BINDING SITE FOR RESIDUE EDO A 911
12
BC3
SOFTWARE
ALA A:280 , ASN A:281 , GLU A:395 , GLY A:396 , HOH A:1159
BINDING SITE FOR RESIDUE EDO A 912
13
BC4
SOFTWARE
ARG A:26 , GLY A:27 , ASP A:49 , HOH A:1564 , HOH A:1771
BINDING SITE FOR RESIDUE EDO A 913
14
BC5
SOFTWARE
MET A:1 , LEU A:3 , GLY A:12 , LEU A:13 , PRO A:743 , LYS A:745 , HOH A:1214 , HOH A:1479
BINDING SITE FOR RESIDUE EDO A 914
15
BC6
SOFTWARE
ALA A:196 , GLY A:197 , VAL A:314 , LYS A:319 , HOH A:1237 , HOH A:1737
BINDING SITE FOR RESIDUE EDO A 915
16
BC7
SOFTWARE
ALA A:334 , GLU A:480 , LYS A:483 , HOH A:1207
BINDING SITE FOR RESIDUE EDO A 916
17
BC8
SOFTWARE
SER A:473 , ALA A:500 , ASP A:503 , ASN A:504 , HOH A:1858
BINDING SITE FOR RESIDUE EDO A 917
18
BC9
SOFTWARE
SER A:120 , SER A:258 , HOH A:1472
BINDING SITE FOR RESIDUE EDO A 918
19
CC1
SOFTWARE
ARG A:102 , ASN A:104 , GLY A:105 , GLU A:106 , SER A:209 , EDO A:905 , HOH A:1599
BINDING SITE FOR RESIDUE EDO A 919
20
CC2
SOFTWARE
HOH A:1425 , HOH A:1712
BINDING SITE FOR RESIDUE EDO A 920
21
CC3
SOFTWARE
GLY A:317 , HIS A:593 , PHE A:605 , HOH A:1376 , HOH A:1581 , HOH A:1909
BINDING SITE FOR RESIDUE EDO A 921
22
CC4
SOFTWARE
ASN A:218 , HOH A:1384 , HOH A:1500 , HOH A:1855
BINDING SITE FOR RESIDUE EDO A 922
23
CC5
SOFTWARE
LEU A:770 , VAL A:784 , GLU A:785 , HOH A:1124 , HOH A:1355 , HOH A:1429
BINDING SITE FOR RESIDUE EDO A 923
24
CC6
SOFTWARE
ILE A:335 , LYS A:360 , ALA A:365 , ASN A:382 , HOH A:1896
BINDING SITE FOR RESIDUE EDO A 924
25
CC7
SOFTWARE
ASP A:810 , SER A:813 , THR A:815 , HOH A:1959
BINDING SITE FOR RESIDUE EDO A 925
26
CC8
SOFTWARE
GLY A:316 , GLY A:317 , ASP A:494 , HIS A:593 , HOH A:1581 , HOH A:1658
BINDING SITE FOR RESIDUE EDO A 926
27
CC9
SOFTWARE
HIS A:511 , HOH A:1325 , HOH A:1540
BINDING SITE FOR RESIDUE EDO A 927
28
DC1
SOFTWARE
GLY A:538 , THR A:540 , LYS A:792 , LEU A:793
BINDING SITE FOR RESIDUE EDO A 928
29
DC2
SOFTWARE
HIS A:407 , ALA A:440 , KCX A:490 , HIS A:492 , HIS A:519 , HIS A:545 , GLY A:550 , ASP A:633 , NI A:901 , NI A:902
BINDING SITE FOR RESIDUE HAE A 929
30
DC3
SOFTWARE
THR A:339 , THR A:432 , GLN A:449 , GLY A:724 , MET A:725 , VAL A:726 , HOH A:1618
BINDING SITE FOR RESIDUE EDO A 930
31
DC4
SOFTWARE
ARG A:132 , ASN A:297 , HOH A:1257 , HOH A:1700
BINDING SITE FOR RESIDUE EDO A 931
32
DC5
SOFTWARE
VAL A:232 , ASN A:233 , GLU A:234 , HOH A:1841
BINDING SITE FOR RESIDUE EDO A 932
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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