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4H6C
Biol. Unit 2
Info
Asym.Unit (810 KB)
Biol.Unit 1 (210 KB)
Biol.Unit 2 (208 KB)
Biol.Unit 3 (203 KB)
Biol.Unit 4 (200 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ALLENE OXIDE CYCLASE 1 FROM PHYSCOMITRELLA PATENS
Authors
:
P. Neumann, R. Ficner
Date
:
19 Sep 12 (Deposition) - 17 Oct 12 (Release) - 12 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,C,D (1x)
Biol. Unit 2: B,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
B-Barrel, Oxylipins, Fatty Acid, Metabolites, Allene-Oxide Cyclase Activity, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Neumann, F. Brodhun, K. Sauer, C. Herrfurth, M. Hamberg, J. Brinkmann, J. Scholz, A. Dickmanns, I. Feussner, R. Ficner
Crystal Structures Of Physcomitrella Patens Aoc1 And Aoc2: Insights Into The Enzyme Mechanism And Differences In Substrate Specificity.
Plant Physiol. V. 160 1251 2012
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: HEXANE-1,6-DIOL (HEZa)
1b: HEXANE-1,6-DIOL (HEZb)
1c: HEXANE-1,6-DIOL (HEZc)
1d: HEXANE-1,6-DIOL (HEZd)
1e: HEXANE-1,6-DIOL (HEZe)
1f: HEXANE-1,6-DIOL (HEZf)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
2h: PHOSPHATE ION (PO4h)
2i: PHOSPHATE ION (PO4i)
2j: PHOSPHATE ION (PO4j)
2k: PHOSPHATE ION (PO4k)
2l: PHOSPHATE ION (PO4l)
2m: PHOSPHATE ION (PO4m)
2n: PHOSPHATE ION (PO4n)
2o: PHOSPHATE ION (PO4o)
2p: PHOSPHATE ION (PO4p)
2q: PHOSPHATE ION (PO4q)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HEZ
3
Ligand/Ion
HEXANE-1,6-DIOL
2
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(9, 9)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC2 (SOFTWARE)
8: BC3 (SOFTWARE)
9: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
PHE D:29 , TYR D:87 , TYR D:107 , HOH D:527 , HOH D:598 , THR E:40
BINDING SITE FOR RESIDUE HEZ D 301
2
AC6
SOFTWARE
GLU B:18 , VAL B:51 , PHE B:53 , TYR B:144 , HOH B:475
BINDING SITE FOR RESIDUE HEZ B 201
3
AC7
SOFTWARE
TYR B:94 , HIS B:100 , SER B:121 , HOH B:324 , HOH B:409 , HOH B:468 , HOH B:525 , PRO E:106 , TYR E:114
BINDING SITE FOR RESIDUE PO4 B 202
4
AC8
SOFTWARE
LYS B:56 , ARG B:65 , LYS B:189 , HOH B:388 , HOH B:528
BINDING SITE FOR RESIDUE PO4 B 203
5
AC9
SOFTWARE
THR D:40 , PHE E:53 , TYR E:87 , TYR E:107 , HOH E:420 , HOH E:423 , HOH E:431
BINDING SITE FOR RESIDUE HEZ E 201
6
BC1
SOFTWARE
TYR E:94 , GLY E:99 , HIS E:100 , SER E:121 , HOH E:359 , HOH E:376 , HOH E:456 , HOH E:459 , PRO F:106 , TYR F:114 , HOH F:337
BINDING SITE FOR RESIDUE PO4 E 202
7
BC2
SOFTWARE
PHE F:29 , VAL F:51 , TYR F:87 , TYR F:107 , HOH F:427 , HOH F:440 , HOH F:464
BINDING SITE FOR RESIDUE HEZ F 201
8
BC3
SOFTWARE
PRO B:106 , SER B:113 , TYR B:114 , HOH B:416 , HIS F:100 , SER F:121 , HOH F:320 , HOH F:401 , HOH F:407
BINDING SITE FOR RESIDUE PO4 F 202
9
BC5
SOFTWARE
HOH B:536 , PRO G:165 , HOH G:322 , HOH G:489
BINDING SITE FOR RESIDUE HEZ G 202
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d4h6ca_ (A:)
1b: SCOP_d4h6cb_ (B:)
1c: SCOP_d4h6ck_ (K:)
1d: SCOP_d4h6cl_ (L:)
1e: SCOP_d4h6cc_ (C:)
1f: SCOP_d4h6cd_ (D:)
1g: SCOP_d4h6ce_ (E:)
1h: SCOP_d4h6cf_ (F:)
1i: SCOP_d4h6cg_ (G:)
1j: SCOP_d4h6ch_ (H:)
1k: SCOP_d4h6ci_ (I:)
1l: SCOP_d4h6cj_ (J:)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
AOC barrel-like
(13)
Superfamily
:
Allene oxide cyclase-like
(11)
Family
:
Allene oxide cyclase-like
(9)
Protein domain
:
automated matches
(3)
Physcomitrella patens [TaxId: 3218]
(2)
1a
d4h6ca_
A:
1b
d4h6cb_
B:
1c
d4h6ck_
K:
1d
d4h6cl_
L:
1e
d4h6cc_
C:
1f
d4h6cd_
D:
1g
d4h6ce_
E:
1h
d4h6cf_
F:
1i
d4h6cg_
G:
1j
d4h6ch_
H:
1k
d4h6ci_
I:
1l
d4h6cj_
J:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (810 KB)
Header - Asym.Unit
Biol.Unit 1 (210 KB)
Header - Biol.Unit 1
Biol.Unit 2 (208 KB)
Header - Biol.Unit 2
Biol.Unit 3 (203 KB)
Header - Biol.Unit 3
Biol.Unit 4 (200 KB)
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