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4H6B
Biol. Unit 2
Info
Asym.Unit (828 KB)
Biol.Unit 1 (215 KB)
Biol.Unit 2 (213 KB)
Biol.Unit 3 (207 KB)
Biol.Unit 4 (207 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR ALLENE OXIDE CYCLIZATION IN MOSS
Authors
:
P. Neumann, R. Ficner
Date
:
19 Sep 12 (Deposition) - 17 Oct 12 (Release) - 12 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,C,D (1x)
Biol. Unit 2: B,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
B-Barrel, Oxylipins, Fatty Acid, Metabolites, Allene-Oxide Cyclase Activity, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Neumann, F. Brodhun, K. Sauer, C. Herrfurth, M. Hamberg, J. Brinkmann, J. Scholz, A. Dickmanns, I. Feussner, R. Ficner
Crystal Structures Of Physcomitrella Patens Aoc1 And Aoc2: Insights Into The Enzyme Mechanism And Differences In Substrate Specificity.
Plant Physiol. V. 160 1251 2012
[
close entry info
]
Hetero Components
(3, 12)
Info
All Hetero Components
1a: (9Z)-11-{(2S,3S)-3-[(2Z)-PENT-2-EN... (10Xa)
1b: (9Z)-11-{(2S,3S)-3-[(2Z)-PENT-2-EN... (10Xb)
1c: (9Z)-11-{(2S,3S)-3-[(2Z)-PENT-2-EN... (10Xc)
2a: (9Z)-11-{(2R,3S)-3-[(2Z)-PENT-2-EN... (10Ya)
2b: (9Z)-11-{(2R,3S)-3-[(2Z)-PENT-2-EN... (10Yb)
3a: HEXANE-1,6-DIOL (HEZa)
3b: HEXANE-1,6-DIOL (HEZb)
3c: HEXANE-1,6-DIOL (HEZc)
3d: HEXANE-1,6-DIOL (HEZd)
3e: HEXANE-1,6-DIOL (HEZe)
3f: HEXANE-1,6-DIOL (HEZf)
3g: HEXANE-1,6-DIOL (HEZg)
3h: HEXANE-1,6-DIOL (HEZh)
3i: HEXANE-1,6-DIOL (HEZi)
3j: HEXANE-1,6-DIOL (HEZj)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
4f: PHOSPHATE ION (PO4f)
4g: PHOSPHATE ION (PO4g)
4h: PHOSPHATE ION (PO4h)
4i: PHOSPHATE ION (PO4i)
4j: PHOSPHATE ION (PO4j)
4k: PHOSPHATE ION (PO4k)
4l: PHOSPHATE ION (PO4l)
4m: PHOSPHATE ION (PO4m)
4n: PHOSPHATE ION (PO4n)
4o: PHOSPHATE ION (PO4o)
4p: PHOSPHATE ION (PO4p)
4q: PHOSPHATE ION (PO4q)
4r: PHOSPHATE ION (PO4r)
4s: PHOSPHATE ION (PO4s)
4t: PHOSPHATE ION (PO4t)
4u: PHOSPHATE ION (PO4u)
4v: PHOSPHATE ION (PO4v)
4w: PHOSPHATE ION (PO4w)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
10X
1
Ligand/Ion
(9Z)-11-{(2S,3S)-3-[(2Z)-PENT-2-EN-1-YL]OXIRAN-2-YL}UNDEC-9-ENOIC ACID
2
10Y
-1
Ligand/Ion
(9Z)-11-{(2R,3S)-3-[(2Z)-PENT-2-EN-1-YL]OXIRAN-2-YL}UNDEC-9-ENOIC ACID
3
HEZ
5
Ligand/Ion
HEXANE-1,6-DIOL
4
PO4
6
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC5 (SOFTWARE)
02: BC1 (SOFTWARE)
03: BC2 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
TYR D:87 , TYR D:107 , HOH D:415 , HOH D:462 , HOH D:466 , THR E:40
BINDING SITE FOR RESIDUE HEZ D 201
02
BC1
SOFTWARE
GLU B:18 , PRO B:27 , PHE B:29 , VAL B:51 , PHE B:53 , ASN B:55 , CYS B:73 , TYR B:87 , TYR B:91 , TYR B:107 , TYR B:144 , HOH B:465 , HOH B:480 , HOH B:612
BINDING SITE FOR RESIDUE 10X B 301
03
BC2
SOFTWARE
TYR B:94 , GLY B:99 , HIS B:100 , SER B:121 , HOH B:445 , HOH B:470 , HOH B:565 , HOH B:566 , PRO E:106 , TYR E:114 , HOH E:493
BINDING SITE FOR RESIDUE PO4 B 302
04
BC3
SOFTWARE
ARG B:24 , LYS B:56 , ARG B:65 , LYS B:189 , HOH B:590
BINDING SITE FOR RESIDUE PO4 B 303
05
BC4
SOFTWARE
PHE B:15 , PHE B:143 , HOH B:449 , HOH B:520 , HOH B:627 , PRO G:164 , PRO G:165 , HOH G:339
BINDING SITE FOR RESIDUE HEZ B 304
06
BC5
SOFTWARE
THR D:40 , TYR E:87 , TYR E:107 , HOH E:439 , HOH E:445 , HOH E:452
BINDING SITE FOR RESIDUE HEZ E 201
07
BC6
SOFTWARE
TYR E:94 , GLY E:99 , HIS E:100 , SER E:121 , HOH E:367 , HOH E:437 , HOH E:475 , HOH E:501 , PRO F:106 , SER F:113 , TYR F:114 , HOH F:523
BINDING SITE FOR RESIDUE PO4 E 202
08
BC7
SOFTWARE
ARG E:24 , LYS E:56 , ARG E:65 , LYS E:189 , HOH E:380 , HOH E:544 , HOH E:545
BINDING SITE FOR RESIDUE PO4 E 203
09
BC8
SOFTWARE
ASP F:97 , ASN F:186 , HOH F:459 , HOH F:504 , HOH F:591 , ASP I:97 , ILE I:123
BINDING SITE FOR RESIDUE HEZ F 301
10
BC9
SOFTWARE
PRO B:106 , TYR B:114 , HOH B:570 , TYR F:94 , HIS F:100 , SER F:121 , HOH F:482 , HOH F:510 , HOH F:526 , HOH F:538
BINDING SITE FOR RESIDUE PO4 F 302
11
CC1
SOFTWARE
ARG F:24 , LYS F:56 , ARG F:65 , LYS F:189
BINDING SITE FOR RESIDUE PO4 F 303
12
CC2
SOFTWARE
TYR F:87 , HEZ F:305 , HOH F:452
BINDING SITE FOR RESIDUE HEZ F 304
13
CC3
SOFTWARE
PHE F:29 , ASN F:45 , HEZ F:304 , HOH F:453 , HOH F:457 , HOH F:513
BINDING SITE FOR RESIDUE HEZ F 305
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d4h6ba_ (A:)
1b: SCOP_d4h6bb_ (B:)
1c: SCOP_d4h6bc_ (C:)
1d: SCOP_d4h6bd_ (D:)
1e: SCOP_d4h6be_ (E:)
1f: SCOP_d4h6bf_ (F:)
1g: SCOP_d4h6bg_ (G:)
1h: SCOP_d4h6bh_ (H:)
1i: SCOP_d4h6bi_ (I:)
1j: SCOP_d4h6bj_ (J:)
1k: SCOP_d4h6bk_ (K:)
1l: SCOP_d4h6bl_ (L:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
AOC barrel-like
(13)
Superfamily
:
Allene oxide cyclase-like
(11)
Family
:
Allene oxide cyclase-like
(9)
Protein domain
:
automated matches
(3)
Physcomitrella patens [TaxId: 3218]
(2)
1a
d4h6ba_
A:
1b
d4h6bb_
B:
1c
d4h6bc_
C:
1d
d4h6bd_
D:
1e
d4h6be_
E:
1f
d4h6bf_
F:
1g
d4h6bg_
G:
1h
d4h6bh_
H:
1i
d4h6bi_
I:
1j
d4h6bj_
J:
1k
d4h6bk_
K:
1l
d4h6bl_
L:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (828 KB)
Header - Asym.Unit
Biol.Unit 1 (215 KB)
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Biol.Unit 3 (207 KB)
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Biol.Unit 4 (207 KB)
Header - Biol.Unit 4
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