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4H52
Asym. Unit
Info
Asym.Unit (294 KB)
Biol.Unit 1 (568 KB)
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(1)
Title
:
WILD-TYPE INFLUENZA N2 NEURAMINIDASE COVALENT COMPLEX WITH 3-FLUORO-NEU5AC
Authors
:
C. J. Vavricka, Y. Liu, H. Kiyota, N. Sriwilaijaroen, J. Qi, K. Tanaka, Y Y. Li, J. Yan, Y. Suzuki, G. F. Gao
Date
:
18 Sep 12 (Deposition) - 20 Feb 13 (Release) - 31 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Neuraminidase, Influenza Surface Glycoprotein, Hydrolase, Hydrolase- Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Vavricka, Y. Liu, H. Kiyota, N. Sriwilaijaroen, J. Qi, K. Tanaka, Y. Wu, Q. Li, Y. Li, J. Yan, Y. Suzuki, G. F. Gao
Influenza Neuraminidase Operates Via A Nucleophilic Mechanism And Can Be Targeted By Covalent Inhibitors
Nat Commun V. 4 1491 2013
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: 5-(ACETYLAMINO)-3,5-DIDEOXY-3-FLUO... (FSIa)
3b: 5-(ACETYLAMINO)-3,5-DIDEOXY-3-FLUO... (FSIb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
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No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
FSI
2
Ligand/Ion
5-(ACETYLAMINO)-3,5-DIDEOXY-3-FLUORO-D-ERYTHRO-ALPHA-L-MANNO-NON-2-ULOPYRANOSONIC ACID
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , GLN A:347 , HOH A:602
BINDING SITE FOR RESIDUE CA A 501
2
AC2
SOFTWARE
ARG A:118 , GLU A:119 , ARG A:152 , ARG A:224 , ALA A:246 , GLU A:276 , GLU A:277 , ARG A:292 , ARG A:371 , TYR A:406 , HOH A:678 , HOH A:707 , HOH A:718 , HOH A:725 , HOH A:743 , HOH A:757 , HOH A:882
BINDING SITE FOR RESIDUE FSI A 508
3
AC3
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , GLN B:347 , HOH B:607
BINDING SITE FOR RESIDUE CA B 501
4
AC4
SOFTWARE
ARG B:118 , GLU B:119 , ARG B:152 , ARG B:224 , ALA B:246 , GLU B:276 , GLU B:277 , ARG B:292 , ARG B:371 , TYR B:406 , HOH B:688 , HOH B:699 , HOH B:717 , HOH B:747 , HOH B:751 , HOH B:758 , HOH B:829 , HOH B:905
BINDING SITE FOR RESIDUE FSI B 508
5
AC5
SOFTWARE
ASN A:146 , TRP A:437 , HOH A:818 , HOH A:819 , HOH A:938 , HOH A:949 , HOH A:1018 , HOH A:1020 , HOH A:1040
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 146 RESIDUES 502 TO 503
6
AC6
SOFTWARE
ASN A:200 , HOH A:642 , HOH A:679 , HOH A:690 , HOH A:709 , HOH A:735 , HOH A:797 , HOH A:812 , HOH A:816 , HOH A:840 , HOH A:876 , HOH A:899 , HOH A:934 , HOH A:956 , HOH A:1038 , GLN B:391 , VAL B:392 , ASN B:393 , ARG B:394 , TYR B:453 , GLY B:454 , THR B:455 , HOH B:617 , HOH B:676
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 200 RESIDUES 504 TO 507
7
AC7
SOFTWARE
PHE A:466 , ASN B:146 , TRP B:437 , HOH B:882 , HOH B:945 , HOH B:1005
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 146 RESIDUES 502 TO 503
8
AC8
SOFTWARE
GLN A:391 , VAL A:392 , ASN A:393 , ARG A:394 , TYR A:453 , GLY A:454 , THR A:455 , HOH A:634 , HOH A:671 , ASN B:200 , HOH B:614 , HOH B:638 , HOH B:696 , HOH B:698 , HOH B:700 , HOH B:763 , HOH B:793 , HOH B:797 , HOH B:891 , HOH B:926 , HOH B:947 , HOH B:1014
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 200 RESIDUES 504 TO 507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4h52a_ (A:)
1b: SCOP_d4h52b_ (B:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
automated matches
(38)
Influenza a virus [TaxId: 382827]
(9)
1a
d4h52a_
A:
1b
d4h52b_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (294 KB)
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