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4H49
Biol. Unit 1
Info
Asym.Unit (123 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF MMP-12 IN COMPLEX WITH A TWIN INHIBITOR.
Authors
:
C. Antoni, E. A. Stura, L. Vera, E. Nuti, L. Carafa, E. Cassar-Lajeuness A. Rossello
Date
:
17 Sep 12 (Deposition) - 24 Apr 13 (Release) - 12 Aug 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Divalent Inhibitor, Carboxylic Twin Inhibitor, Dimerisation, Metzincin, Zinc Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Antoni, L. Vera, L. Devel, M. P. Catalani, B. Czarny, E. Cassar-Lajeunesse, E. Nuti, A. Rossello, V. Dive, E. A. Stura
Crystallization Of Bi-Functional Ligand Protein Complexes.
J. Struct. Biol. V. 182 246 2013
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: DIMETHYL SULFOXIDE (DMSa)
3a: GLYCEROL (GOLa)
4a: N,N'-BIS(2-{(BIPHENYL-4-YLSULFONYL... (L29a)
4b: N,N'-BIS(2-{(BIPHENYL-4-YLSULFONYL... (L29b)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
6a: S-1,2-PROPANEDIOL (PGOa)
6b: S-1,2-PROPANEDIOL (PGOb)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
7d: ZINC ION (ZNd)
7e: ZINC ION (ZNe)
7f: ZINC ION (ZNf)
7g: ZINC ION (ZNg)
7h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
3
GOL
1
Ligand/Ion
GLYCEROL
4
L29
1
Ligand/Ion
N,N'-BIS(2-{(BIPHENYL-4-YLSULFONYL)[(2R)-1-(HYDROXYAMINO)-3-METHYL-1-OXOBUTAN-2-YL]AMINO}ETHYL)BENZENE-1,3-DICARBOXAMIDE (NON-PREFERRED NAME)
5
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PGO
2
Ligand/Ion
S-1,2-PROPANEDIOL
7
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: CC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:218 , HIS A:222 , HIS A:228 , L29 B:601
BINDING SITE FOR RESIDUE ZN A 301
02
AC2
SOFTWARE
HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196
BINDING SITE FOR RESIDUE ZN A 302
03
AC3
SOFTWARE
ASP A:158 , GLY A:190 , GLY A:192 , ASP A:194 , HOH A:431 , HOH A:432
BINDING SITE FOR RESIDUE CA A 303
04
AC4
SOFTWARE
ASP A:124 , GLU A:199 , GLU A:201 , HOH A:408 , HOH A:409
BINDING SITE FOR RESIDUE CA A 304
05
AC5
SOFTWARE
ASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201
BINDING SITE FOR RESIDUE CA A 305
06
AC6
SOFTWARE
GLY A:166 , ALA A:167 , DMS A:307
BINDING SITE FOR RESIDUE PGO A 306
07
AC7
SOFTWARE
ARG A:165 , HIS A:168 , PGO A:306
BINDING SITE FOR RESIDUE DMS A 307
08
AC8
SOFTWARE
ASN A:120 , TYR A:121 , ARG A:127 , PGO A:309 , HOH A:447
BINDING SITE FOR RESIDUE PEG A 308
09
AC9
SOFTWARE
ASN A:119 , ARG A:127 , PEG A:308
BINDING SITE FOR RESIDUE PGO A 309
10
BC1
SOFTWARE
ILE A:180 , LEU A:181 , ALA A:182 , LEU A:214 , THR A:215 , HIS A:218 , GLU A:219 , HIS A:222 , HIS A:228 , VAL A:235 , PHE A:237 , PRO A:238 , THR A:239 , TYR A:240 , ZN A:301 , ILE B:180 , LEU B:181 , ALA B:182 , LEU B:214 , HIS B:218 , GLU B:219 , HIS B:222 , HIS B:228 , VAL B:235 , PHE B:237 , PRO B:238 , THR B:239 , TYR B:240 , ZN B:602 , GOL B:608 , HOH B:728 , HOH B:729 , HOH B:731
BINDING SITE FOR RESIDUE L29 B 601
11
BC2
SOFTWARE
HIS B:218 , HIS B:222 , HIS B:228 , L29 B:601
BINDING SITE FOR RESIDUE ZN B 602
12
BC3
SOFTWARE
HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196
BINDING SITE FOR RESIDUE ZN B 603
13
BC4
SOFTWARE
ASP B:158 , GLY B:190 , GLY B:192 , ASP B:194 , HOH B:735
BINDING SITE FOR RESIDUE CA B 604
14
BC5
SOFTWARE
ASP B:124 , GLU B:199 , GLU B:201 , HOH B:708
BINDING SITE FOR RESIDUE CA B 605
15
BC6
SOFTWARE
ASP B:175 , GLY B:176 , GLY B:178 , ILE B:180 , ASP B:198 , GLU B:201
BINDING SITE FOR RESIDUE CA B 606
16
BC7
SOFTWARE
GLY A:178 , GLY A:179 , TYR B:240 , TYR B:242 , HOH B:750
BINDING SITE FOR RESIDUE PEG B 607
17
BC8
SOFTWARE
THR B:239 , LYS B:241 , VAL B:243 , L29 B:601 , HOH B:732
BINDING SITE FOR RESIDUE GOL B 608
18
CC6
SOFTWARE
GLU B:128 , TYR C:116 , ARG C:135 , PHE C:149 , LYS C:151 , HOH C:411 , HOH C:423 , HOH C:435
BINDING SITE FOR RESIDUE PEG C 307
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4h49a_ (A:)
1b: SCOP_d4h49b_ (B:)
1c: SCOP_d4h49c_ (C:)
1d: SCOP_d4h49d_ (D:)
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Classes
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
automated matches
(32)
Human (Homo sapiens) [TaxId: 9606]
(32)
1a
d4h49a_
A:
1b
d4h49b_
B:
1c
d4h49c_
C:
1d
d4h49d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Show PDB file:
Asym.Unit (123 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
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