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4H31
Asym. Unit
Info
Asym.Unit (338 KB)
Biol.Unit 1 (329 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ANABOLIC ORNITHINE CARBAMOYLTRANSFERASE FROM VIBRIO VULNIFICUS IN COMPLEX WITH CARBAMOYL PHOSPHATE AND L-NORVALINE
Authors
:
I. G. Shabalin, J. Winsor, S. Grimshaw, T. Osinski, M. D. Chordia, L. Shu W. F. Anderson, W. Minor, Center For Structural Genomics Of Infe Diseases (Csgid)
Date
:
13 Sep 12 (Deposition) - 26 Sep 12 (Release) - 26 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase, Carbamoyl Phosphate And L-Ornithine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. G. Shabalin, J. Winsor, S. Grimshaw, T. Osinski, M. D. Chordia, W. F. Anderson, W. Minor
Structural Studies Of Ornithine Carbamoyltransferase From Various Pathogens
To Be Published
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Hetero Components
(5, 33)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPa)
2b: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPb)
2c: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPc)
3a: NORVALINE (NVAa)
3b: NORVALINE (NVAb)
3c: NORVALINE (NVAc)
4a: 3,6,9,12,15,18,21,24-OCTAOXAHEXACO... (PE5a)
4b: 3,6,9,12,15,18,21,24-OCTAOXAHEXACO... (PE5b)
4c: 3,6,9,12,15,18,21,24-OCTAOXAHEXACO... (PE5c)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
5h: DI(HYDROXYETHYL)ETHER (PEGh)
5i: DI(HYDROXYETHYL)ETHER (PEGi)
5j: DI(HYDROXYETHYL)ETHER (PEGj)
5k: DI(HYDROXYETHYL)ETHER (PEGk)
5l: DI(HYDROXYETHYL)ETHER (PEGl)
5m: DI(HYDROXYETHYL)ETHER (PEGm)
5n: DI(HYDROXYETHYL)ETHER (PEGn)
5o: DI(HYDROXYETHYL)ETHER (PEGo)
5p: DI(HYDROXYETHYL)ETHER (PEGp)
5q: DI(HYDROXYETHYL)ETHER (PEGq)
5r: DI(HYDROXYETHYL)ETHER (PEGr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
CP
3
Ligand/Ion
PHOSPHORIC ACID MONO(FORMAMIDE)ESTER
3
NVA
3
Ligand/Ion
NORVALINE
4
PE5
3
Ligand/Ion
3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
5
PEG
18
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:168 , ASN A:169 , ASP A:233 , SER A:237 , MET A:238 , LEU A:276 , CP A:402 , HOH A:514 , HOH B:503
BINDING SITE FOR RESIDUE NVA A 401
02
AC2
SOFTWARE
SER A:57 , THR A:58 , ARG A:59 , THR A:60 , ARG A:108 , HIS A:135 , GLN A:138 , CYS A:275 , LEU A:276 , ARG A:320 , NVA A:401 , GLN B:84
BINDING SITE FOR RESIDUE CP A 402
03
AC3
SOFTWARE
GLU A:307 , HOH A:676 , ALA B:120 , PHE B:121 , ARG B:186 , THR B:215 , GLU B:222
BINDING SITE FOR RESIDUE PE5 A 403
04
AC4
SOFTWARE
GLU A:218 , ASN A:219 , VAL A:220 , HOH A:573 , HOH A:590
BINDING SITE FOR RESIDUE PEG A 404
05
AC5
SOFTWARE
ASP A:132 , MET A:238 , GLY A:239 , GLU A:240
BINDING SITE FOR RESIDUE PEG A 405
06
AC6
SOFTWARE
LYS A:263 , ASN A:267 , PRO A:268 , HIS A:310
BINDING SITE FOR RESIDUE PEG A 406
07
AC7
SOFTWARE
LEU A:13 , PHE A:134 , SER A:173 , HOH A:505
BINDING SITE FOR RESIDUE CL A 407
08
AC8
SOFTWARE
THR A:215 , GLU A:222
BINDING SITE FOR RESIDUE PEG A 408
09
AC9
SOFTWARE
GLU A:116 , ASN A:260 , GLN A:264 , HOH A:575
BINDING SITE FOR RESIDUE PEG A 409
10
BC1
SOFTWARE
LYS A:253 , GLN A:256 , ASN A:258 , HOH A:542
BINDING SITE FOR RESIDUE PEG A 410
11
BC2
SOFTWARE
ASN A:258 , MET A:259 , THR A:302
BINDING SITE FOR RESIDUE CL A 411
12
BC3
SOFTWARE
ARG A:96 , GLN A:225 , HOH A:617 , PHE C:306 , GLU C:307 , SER C:311 , PHE C:314 , HOH C:612
BINDING SITE FOR RESIDUE PEG A 412
13
BC4
SOFTWARE
ASP A:30
BINDING SITE FOR RESIDUE PEG A 413
14
BC5
SOFTWARE
ASN B:168 , ASN B:169 , ASP B:233 , SER B:237 , MET B:238 , LEU B:276 , CP B:402 , HOH B:515 , HOH C:531
BINDING SITE FOR RESIDUE NVA B 401
15
BC6
SOFTWARE
SER B:57 , THR B:58 , ARG B:59 , THR B:60 , ARG B:108 , HIS B:135 , GLN B:138 , CYS B:275 , LEU B:276 , ARG B:320 , NVA B:401 , GLN C:84
BINDING SITE FOR RESIDUE CP B 402
16
BC7
SOFTWARE
ALA B:205 , GLN B:209 , LYS B:253 , PHE B:294 , HOH B:637
BINDING SITE FOR RESIDUE PEG B 403
17
BC8
SOFTWARE
LEU B:13 , PHE B:134 , SER B:173
BINDING SITE FOR RESIDUE CL B 404
18
BC9
SOFTWARE
LEU B:262 , ASN B:267 , HIS B:310
BINDING SITE FOR RESIDUE PEG B 405
19
CC1
SOFTWARE
ASN B:258 , MET B:259 , THR B:302 , GLU B:304
BINDING SITE FOR RESIDUE CL B 406
20
CC2
SOFTWARE
GLU A:283 , THR A:285 , GLY B:86
BINDING SITE FOR RESIDUE PEG B 407
21
CC3
SOFTWARE
ALA B:156 , ASP B:157 , ILE B:158 , GLY B:182 , GLY B:211
BINDING SITE FOR RESIDUE PEG B 408
22
CC4
SOFTWARE
ALA B:29 , LYS B:32 , GLU B:148
BINDING SITE FOR RESIDUE PEG B 409
23
CC5
SOFTWARE
ASP B:132 , ARG B:167 , MET B:238 , GLY B:239
BINDING SITE FOR RESIDUE PE5 B 410
24
CC6
SOFTWARE
SER B:17 , THR B:18 , LYS B:180 , LYS B:253
BINDING SITE FOR RESIDUE PEG B 411
25
CC7
SOFTWARE
HOH A:540 , ASN C:168 , ASN C:169 , ASP C:233 , SER C:237 , MET C:238 , LEU C:276 , CP C:403 , HOH C:511
BINDING SITE FOR RESIDUE NVA C 401
26
CC8
SOFTWARE
LEU C:13 , SER C:173
BINDING SITE FOR RESIDUE CL C 402
27
CC9
SOFTWARE
GLN A:84 , SER C:57 , THR C:58 , ARG C:59 , THR C:60 , ARG C:108 , HIS C:135 , GLN C:138 , CYS C:275 , LEU C:276 , ARG C:320 , NVA C:401
BINDING SITE FOR RESIDUE CP C 403
28
DC1
SOFTWARE
ASP C:132 , ARG C:167 , MET C:238 , HOH C:526
BINDING SITE FOR RESIDUE PE5 C 404
29
DC2
SOFTWARE
THR C:215 , GLU C:222
BINDING SITE FOR RESIDUE PEG C 405
30
DC3
SOFTWARE
LEU C:262 , ASN C:267 , HIS C:310
BINDING SITE FOR RESIDUE PEG C 406
31
DC4
SOFTWARE
GLN A:264
BINDING SITE FOR RESIDUE PEG C 407
32
DC5
SOFTWARE
ASN C:258 , MET C:259 , THR C:302 , GLU C:304
BINDING SITE FOR RESIDUE CL C 408
33
DC6
SOFTWARE
SER C:237 , MET C:238 , GLY C:239 , GLU C:240 , HOH C:514 , HOH C:546 , HOH C:591
BINDING SITE FOR RESIDUE PEG C 409
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4h31a1 (A:-1-152)
1b: SCOP_d4h31a2 (A:153-333)
1c: SCOP_d4h31b1 (B:1-152)
1d: SCOP_d4h31b2 (B:153-333)
1e: SCOP_d4h31c1 (C:1-152)
1f: SCOP_d4h31c2 (C:153-334)
View:
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Vibrio vulnificus [TaxId: 216895]
(6)
1a
d4h31a1
A:-1-152
1b
d4h31a2
A:153-333
1c
d4h31b1
B:1-152
1d
d4h31b2
B:153-333
1e
d4h31c1
C:1-152
1f
d4h31c2
C:153-334
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
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