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4H2E
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN MMP TWIN INHIBITOR COMPLEXING TWO MMP-9 CATALYTIC DOMAINS
Authors
:
E. A. Stura, L. Vera, E. Cassar-Lajeunesse, E. Nuti, M. P. Catalani, V. D A. Rossello
Date
:
12 Sep 12 (Deposition) - 24 Apr 13 (Release) - 31 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase/Twin Inhibitor, Zincin-Like, Gelatinase, Collagenase (Catalytic Domain), Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Antoni, L. Vera, L. Devel, M. P. Catalani, B. Czarny, E. Cassar-Lajeunesse, E. Nuti, A. Rossello, V. Dive, E. A. Stura
Crystallization Of Bi-Functional Ligand Protein Complexes.
J. Struct. Biol. V. 182 246 2013
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Hetero Components
(6, 26)
Info
All Hetero Components
1a: N,N'-BIS(4-{[(3R)-3-[(BIPHENYL-4-Y... (0Y3a)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
3a: BICINE (BCNa)
3b: BICINE (BCNb)
3c: BICINE (BCNc)
4a: CALCIUM ION (CAa)
4b: CALCIUM ION (CAb)
4c: CALCIUM ION (CAc)
4d: CALCIUM ION (CAd)
4e: CALCIUM ION (CAe)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
5h: DI(HYDROXYETHYL)ETHER (PEGh)
5i: DI(HYDROXYETHYL)ETHER (PEGi)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0Y3
1
Ligand/Ion
N,N'-BIS(4-{[(3R)-3-[(BIPHENYL-4-YLSULFONYL)(PROPAN-2-YLOXY)AMINO]-4-(HYDROXYAMINO)-4-OXOBUTYL]AMINO}-4-OXOBUTYL)BENZENE-1,3-DICARBOXAMIDE
2
ACT
4
Ligand/Ion
ACETATE ION
3
BCN
3
Ligand/Ion
BICINE
4
CA
5
Ligand/Ion
CALCIUM ION
5
PEG
9
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:226 , HIS A:230 , HIS A:236 , 0Y3 B:306
BINDING SITE FOR RESIDUE ZN A 301
02
AC2
SOFTWARE
HIS A:175 , ASP A:177 , HIS A:190 , HIS A:203
BINDING SITE FOR RESIDUE ZN A 302
03
AC3
SOFTWARE
ASP A:165 , GLY A:197 , GLN A:199 , ASP A:201
BINDING SITE FOR RESIDUE CA A 303
04
AC4
SOFTWARE
ASP A:182 , GLY A:183 , ASP A:185 , LEU A:187 , ASP A:205 , GLU A:208
BINDING SITE FOR RESIDUE CA A 304
05
AC5
SOFTWARE
LYS A:258 , ALA B:146
BINDING SITE FOR RESIDUE PEG A 305
06
AC6
SOFTWARE
GLU A:241 , HOH A:425 , PEG B:308 , HOH B:460
BINDING SITE FOR RESIDUE PEG A 306
07
AC7
SOFTWARE
PEG A:308
BINDING SITE FOR RESIDUE PEG A 307
08
AC8
SOFTWARE
TYR A:179 , PEG A:307 , HOH A:420
BINDING SITE FOR RESIDUE PEG A 308
09
AC9
SOFTWARE
ALA A:173 , GLU A:174 , PHE A:181 , ACT A:312 , BCN A:314
BINDING SITE FOR RESIDUE PEG A 309
10
BC1
SOFTWARE
ASN A:127 , VAL A:172
BINDING SITE FOR RESIDUE PEG A 310
11
BC2
SOFTWARE
HOH A:440
BINDING SITE FOR RESIDUE ACT A 311
12
BC3
SOFTWARE
PEG A:309
BINDING SITE FOR RESIDUE ACT A 312
13
BC4
SOFTWARE
HOH A:463
BINDING SITE FOR RESIDUE ACT A 313
14
BC5
SOFTWARE
ASP A:182 , PEG A:309 , ARG B:249 , GLU B:252
BINDING SITE FOR RESIDUE BCN A 314
15
BC6
SOFTWARE
HOH A:473
BINDING SITE FOR RESIDUE BCN A 315
16
BC7
SOFTWARE
HIS B:226 , HIS B:230 , HIS B:236 , 0Y3 B:306
BINDING SITE FOR RESIDUE ZN B 301
17
BC8
SOFTWARE
HIS B:175 , ASP B:177 , HIS B:190 , HIS B:203
BINDING SITE FOR RESIDUE ZN B 302
18
BC9
SOFTWARE
ALA B:164 , ASP B:165 , GLY B:197 , GLN B:199 , ASP B:201
BINDING SITE FOR RESIDUE CA B 303
19
CC1
SOFTWARE
ASP B:182 , GLY B:183 , ASP B:185 , LEU B:187 , ASP B:205 , GLU B:208
BINDING SITE FOR RESIDUE CA B 304
20
CC2
SOFTWARE
SER B:129 , ASP B:131 , ASP B:206 , GLU B:208 , TRP B:210
BINDING SITE FOR RESIDUE CA B 305
21
CC3
SOFTWARE
LEU A:187 , LEU A:188 , ALA A:189 , LEU A:222 , HIS A:226 , GLU A:227 , HIS A:230 , ASP A:235 , HIS A:236 , LEU A:243 , TYR A:245 , PRO A:246 , TYR A:248 , ZN A:301 , GLY B:106 , PHE B:107 , LEU B:188 , ALA B:189 , LEU B:222 , VAL B:223 , HIS B:226 , GLU B:227 , HIS B:230 , ASP B:235 , HIS B:236 , LEU B:243 , TYR B:245 , PRO B:246 , MET B:247 , TYR B:248 , ZN B:301 , HOH B:437 , HOH B:459
BINDING SITE FOR RESIDUE 0Y3 B 306
22
CC4
SOFTWARE
PEG B:308
BINDING SITE FOR RESIDUE PEG B 307
23
CC5
SOFTWARE
PEG A:306 , PRO B:180 , PEG B:307 , PEG B:309
BINDING SITE FOR RESIDUE PEG B 308
24
CC6
SOFTWARE
GLY B:178 , TYR B:179 , PEG B:308
BINDING SITE FOR RESIDUE PEG B 309
25
CC7
SOFTWARE
PHE B:250 , THR B:251 , GLU B:252 , HOH B:458
BINDING SITE FOR RESIDUE ACT B 310
26
CC8
SOFTWARE
ALA B:173 , GLU B:174 , PRO B:180 , PHE B:181 , HOH B:449 , HOH B:457
BINDING SITE FOR RESIDUE BCN B 311
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4h2ea_ (A:)
1b: SCOP_d4h2eb_ (B:)
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Classes
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(
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Superfamilies
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Gelatinase B (MMP-9)
(13)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d4h2ea_
A:
1b
d4h2eb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (69 KB)
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Header - Biol.Unit 1
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