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4H19
Biol. Unit 3
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Asym.Unit (1.0 MB)
Biol.Unit 1 (539 KB)
Biol.Unit 2 (531 KB)
Biol.Unit 3 (536 KB)
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Title
:
CRYSTAL STRUCTURE OF AN ENOLASE (MANDELATE RACEMASE SUBGROUP, TARGET EFI-502087) FROM AGROBACTERIUM TUMEFACIENS, WITH BOUND MG AND D-RIBONOHYDROXAMATE, ORDERED LOOP
Authors
:
M. W. Vetting, J. T. Bouvier, L. L. Morisco, S. R. Wasserman, S. Sojitra, H. J. Imker, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Ef
Date
:
10 Sep 12 (Deposition) - 31 Oct 12 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,D,F,K (2x)
Biol. Unit 2: B,C,E,G,H,I,L,M (1x)
Biol. Unit 3: J,N,O,P (2x)
Keywords
:
Enolase, Mandelate Racemase Subgroup, Enzyme Function Initiative, Efi, Structural Genomics, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Vetting, J. T. Bouvier, L. L. Morisco, S. R. Wasserman, S. Sojitra H. J. Imker, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of An Enolase (Mandelate Racemase Subgroup, Target Efi-502087) From Agrobacterium Tumefaciens With Bound Mg And D-Ribonohydroxamate, Ordered Loop
To Be Published
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close entry info
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Hetero Components
(2, 32)
Info
All Hetero Components
1a: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRa)
1b: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRb)
1c: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRc)
1d: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRd)
1e: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRe)
1f: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRf)
1g: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRg)
1h: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRh)
1i: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRi)
1j: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRj)
1k: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRk)
1l: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRl)
1m: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRm)
1n: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRn)
1o: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRo)
1p: (2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXID... (0YRp)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
3a: CHLORIDE ION (CLa)
3aa: CHLORIDE ION (CLaa)
3ab: CHLORIDE ION (CLab)
3ac: CHLORIDE ION (CLac)
3ad: CHLORIDE ION (CLad)
3ae: CHLORIDE ION (CLae)
3af: CHLORIDE ION (CLaf)
3ag: CHLORIDE ION (CLag)
3ah: CHLORIDE ION (CLah)
3ai: CHLORIDE ION (CLai)
3aj: CHLORIDE ION (CLaj)
3ak: CHLORIDE ION (CLak)
3al: CHLORIDE ION (CLal)
3am: CHLORIDE ION (CLam)
3an: CHLORIDE ION (CLan)
3ao: CHLORIDE ION (CLao)
3ap: CHLORIDE ION (CLap)
3aq: CHLORIDE ION (CLaq)
3ar: CHLORIDE ION (CLar)
3as: CHLORIDE ION (CLas)
3at: CHLORIDE ION (CLat)
3au: CHLORIDE ION (CLau)
3av: CHLORIDE ION (CLav)
3aw: CHLORIDE ION (CLaw)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
3i: CHLORIDE ION (CLi)
3j: CHLORIDE ION (CLj)
3k: CHLORIDE ION (CLk)
3l: CHLORIDE ION (CLl)
3m: CHLORIDE ION (CLm)
3n: CHLORIDE ION (CLn)
3o: CHLORIDE ION (CLo)
3p: CHLORIDE ION (CLp)
3q: CHLORIDE ION (CLq)
3r: CHLORIDE ION (CLr)
3s: CHLORIDE ION (CLs)
3t: CHLORIDE ION (CLt)
3u: CHLORIDE ION (CLu)
3v: CHLORIDE ION (CLv)
3w: CHLORIDE ION (CLw)
3x: CHLORIDE ION (CLx)
3y: CHLORIDE ION (CLy)
3z: CHLORIDE ION (CLz)
4a: GLYCEROL (GOLa)
4aa: GLYCEROL (GOLaa)
4ab: GLYCEROL (GOLab)
4ac: GLYCEROL (GOLac)
4ad: GLYCEROL (GOLad)
4ae: GLYCEROL (GOLae)
4af: GLYCEROL (GOLaf)
4ag: GLYCEROL (GOLag)
4ah: GLYCEROL (GOLah)
4ai: GLYCEROL (GOLai)
4aj: GLYCEROL (GOLaj)
4ak: GLYCEROL (GOLak)
4al: GLYCEROL (GOLal)
4am: GLYCEROL (GOLam)
4an: GLYCEROL (GOLan)
4ao: GLYCEROL (GOLao)
4ap: GLYCEROL (GOLap)
4aq: GLYCEROL (GOLaq)
4ar: GLYCEROL (GOLar)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
4o: GLYCEROL (GOLo)
4p: GLYCEROL (GOLp)
4q: GLYCEROL (GOLq)
4r: GLYCEROL (GOLr)
4s: GLYCEROL (GOLs)
4t: GLYCEROL (GOLt)
4u: GLYCEROL (GOLu)
4v: GLYCEROL (GOLv)
4w: GLYCEROL (GOLw)
4x: GLYCEROL (GOLx)
4y: GLYCEROL (GOLy)
4z: GLYCEROL (GOLz)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
5g: MAGNESIUM ION (MGg)
5h: MAGNESIUM ION (MGh)
5i: MAGNESIUM ION (MGi)
5j: MAGNESIUM ION (MGj)
5k: MAGNESIUM ION (MGk)
5l: MAGNESIUM ION (MGl)
5m: MAGNESIUM ION (MGm)
5n: MAGNESIUM ION (MGn)
5o: MAGNESIUM ION (MGo)
5p: MAGNESIUM ION (MGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0YR
8
Ligand/Ion
(2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXIDANYL)PENTANAMIDE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
GOL
24
Ligand/Ion
GLYCEROL
5
MG
-1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: LC3 (SOFTWARE)
02: LC4 (SOFTWARE)
03: LC5 (SOFTWARE)
04: LC6 (SOFTWARE)
05: LC7 (SOFTWARE)
06: LC8 (SOFTWARE)
07: LC9 (SOFTWARE)
08: MC1 (SOFTWARE)
09: MC2 (SOFTWARE)
10: MC3 (SOFTWARE)
11: MC4 (SOFTWARE)
12: MC5 (SOFTWARE)
13: MC6 (SOFTWARE)
14: MC7 (SOFTWARE)
15: MC8 (SOFTWARE)
16: MC9 (SOFTWARE)
17: NC1 (SOFTWARE)
18: NC2 (SOFTWARE)
19: NC3 (SOFTWARE)
20: NC4 (SOFTWARE)
21: NC5 (SOFTWARE)
22: NC6 (SOFTWARE)
23: NC7 (SOFTWARE)
24: NC8 (SOFTWARE)
25: NC9 (SOFTWARE)
26: OC1 (SOFTWARE)
27: OC2 (SOFTWARE)
28: OC3 (SOFTWARE)
29: OC4 (SOFTWARE)
30: OC5 (SOFTWARE)
31: OC6 (SOFTWARE)
32: OC7 (SOFTWARE)
33: OC8 (SOFTWARE)
34: OC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
LC3
SOFTWARE
ASP N:268 , HIS N:298 , ASP P:268 , HIS P:298
BINDING SITE FOR RESIDUE CA N 401
02
LC4
SOFTWARE
TYR N:226 , TYR N:274 , THR N:324 , HOH N:591
BINDING SITE FOR RESIDUE CL N 402
03
LC5
SOFTWARE
GLY J:101 , ILE J:102 , VAL N:97 , ALA N:100 , ILE N:102 , THR N:103
BINDING SITE FOR RESIDUE CL N 403
04
LC6
SOFTWARE
MET N:309 , ILE N:329 , PRO N:330 , TRP N:331 , ILE N:332 , LYS N:333 , HOH N:502
BINDING SITE FOR RESIDUE CL N 404
05
LC7
SOFTWARE
ASP N:203 , GLU N:229 , GLU N:255 , 0YR N:409 , HOH N:691
BINDING SITE FOR RESIDUE MG N 405
06
LC8
SOFTWARE
ASP J:224 , PRO N:180 , ASN N:181 , ARG N:215 , ALA N:219 , HOH N:567
BINDING SITE FOR RESIDUE GOL N 406
07
LC9
SOFTWARE
ARG N:134 , GLY N:137 , GLU N:139 , THR N:324
BINDING SITE FOR RESIDUE GOL N 407
08
MC1
SOFTWARE
ARG N:90 , HOH N:692 , HOH N:744 , ARG P:299
BINDING SITE FOR RESIDUE GOL N 408
09
MC2
SOFTWARE
TRP J:96 , ASP N:22 , HIS N:25 , TRP N:30 , HIS N:52 , TRP N:147 , LYS N:172 , LYS N:174 , ASP N:203 , ASN N:205 , GLU N:229 , GLU N:255 , HIS N:305 , GLU N:327 , MG N:405 , HOH N:691 , HOH N:821
BINDING SITE FOR RESIDUE 0YR N 409
10
MC3
SOFTWARE
TYR P:226 , TYR P:274 , THR P:324 , HOH P:637
BINDING SITE FOR RESIDUE CL P 401
11
MC4
SOFTWARE
GLY O:101 , ILE O:102 , VAL P:97 , ALA P:100 , ILE P:102 , THR P:103
BINDING SITE FOR RESIDUE CL P 402
12
MC5
SOFTWARE
MET P:309 , ILE P:329 , PRO P:330 , TRP P:331 , ILE P:332 , LYS P:333 , HOH P:502
BINDING SITE FOR RESIDUE CL P 403
13
MC6
SOFTWARE
ASP P:203 , GLU P:229 , GLU P:255 , 0YR P:409 , HOH P:578
BINDING SITE FOR RESIDUE MG P 404
14
MC7
SOFTWARE
ASP O:224 , HOH O:647 , PRO P:180 , ASN P:181 , ARG P:215 , ALA P:219
BINDING SITE FOR RESIDUE GOL P 405
15
MC8
SOFTWARE
ARG N:299 , ARG P:90 , HOH P:516 , HOH P:773
BINDING SITE FOR RESIDUE GOL P 406
16
MC9
SOFTWARE
ARG P:134 , THR P:135 , GLY P:137 , VAL P:138 , GLU P:139 , THR P:324
BINDING SITE FOR RESIDUE GOL P 407
17
NC1
SOFTWARE
HIS O:54 , CYS P:68 , PRO P:71 , TYR P:91
BINDING SITE FOR RESIDUE GOL P 408
18
NC2
SOFTWARE
TRP O:96 , ASP P:22 , HIS P:25 , TRP P:30 , HIS P:52 , TRP P:147 , LYS P:172 , LYS P:174 , ASP P:203 , ASN P:205 , GLU P:229 , GLU P:255 , HIS P:305 , GLU P:327 , MG P:404 , HOH P:578
BINDING SITE FOR RESIDUE 0YR P 409
19
NC3
SOFTWARE
ASP J:268 , HIS J:298
BINDING SITE FOR RESIDUE CA J 401
20
NC4
SOFTWARE
TYR J:226 , THR J:324 , HOH N:680
BINDING SITE FOR RESIDUE CL J 402
21
NC5
SOFTWARE
VAL J:97 , ALA J:100 , ILE J:102 , THR J:103 , GLY N:101 , ILE N:102
BINDING SITE FOR RESIDUE CL J 403
22
NC6
SOFTWARE
ASP J:203 , GLU J:229 , GLU J:255 , 0YR J:408 , HOH J:556
BINDING SITE FOR RESIDUE MG J 404
23
NC7
SOFTWARE
PRO J:180 , ASN J:181 , ARG J:215 , PHE J:216 , ALA J:219 , HOH J:583 , ASP P:224
BINDING SITE FOR RESIDUE GOL J 405
24
NC8
SOFTWARE
ARG J:134 , GLU J:139 , THR J:324 , HOH N:680
BINDING SITE FOR RESIDUE GOL J 406
25
NC9
SOFTWARE
ARG J:90 , ARG J:299 , HOH J:743 , HOH J:804 , TRP N:233
BINDING SITE FOR RESIDUE GOL J 407
26
OC1
SOFTWARE
ASP J:22 , HIS J:25 , TRP J:30 , HIS J:52 , TRP J:147 , LYS J:172 , LYS J:174 , ASP J:203 , ASN J:205 , GLU J:229 , GLU J:255 , HIS J:305 , GLU J:327 , MG J:404 , HOH J:556 , TRP N:96
BINDING SITE FOR RESIDUE 0YR J 408
27
OC2
SOFTWARE
ASP O:268 , HIS O:298
BINDING SITE FOR RESIDUE CA O 401
28
OC3
SOFTWARE
TYR O:226 , TYR O:274 , THR O:324
BINDING SITE FOR RESIDUE CL O 402
29
OC4
SOFTWARE
VAL O:97 , ALA O:100 , ILE O:102 , THR O:103 , GLY P:101 , ILE P:102
BINDING SITE FOR RESIDUE CL O 403
30
OC5
SOFTWARE
MET O:309 , ILE O:329 , PRO O:330 , TRP O:331 , ILE O:332 , LYS O:333 , HOH O:502
BINDING SITE FOR RESIDUE CL O 404
31
OC6
SOFTWARE
ASP O:203 , GLU O:229 , GLU O:255 , 0YR O:408 , HOH O:515
BINDING SITE FOR RESIDUE MG O 405
32
OC7
SOFTWARE
ASP N:224 , PRO O:180 , ASN O:181 , ARG O:215 , PHE O:216 , ALA O:219 , HOH O:560
BINDING SITE FOR RESIDUE GOL O 406
33
OC8
SOFTWARE
ARG O:90 , HOH O:703 , TRP P:233
BINDING SITE FOR RESIDUE GOL O 407
34
OC9
SOFTWARE
ASP O:22 , HIS O:25 , TRP O:30 , HIS O:52 , TRP O:147 , LYS O:172 , LYS O:174 , ASP O:203 , ASN O:205 , GLU O:229 , GLU O:255 , HIS O:305 , GLU O:327 , MG O:405 , HOH O:515 , TRP P:96
BINDING SITE FOR RESIDUE 0YR O 408
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SAPs(SNPs)/Variants
(0, 0)
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