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4H15
Asym. Unit
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Asym.Unit (360 KB)
Biol.Unit 1 (346 KB)
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Title
:
CRYSTAL STRUCTURE OF A SHORT CHAIN ALCOHOL DEHYDROGENASE-RELATED DEHYDROGENASE (TARGET ID NYSGRC-011812) FROM SINORHIZOBIUM MELILOTI 1021 IN SPACE GROUP P21
Authors
:
A. Ghosh, S. C. Almo, New York Structural Genomics Research Conso (Nysgrc)
Date
:
10 Sep 12 (Deposition) - 19 Sep 12 (Release) - 19 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Psi-Biology, Nysgrc, New York Structural Genomics Research Consortium, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ghosh, R. Bhoshle, R. Toro, A. Gizzi, B. Hillerich, R. Seidel, S. C. Almo, New York Structural Genomics Research Consortium
Crystal Structure Of A Short Chain Alcohol Dehydrogenase-Related Dehydrogenase (Target Id Nysgrc-011812) From Sinorhizobium Meliloti 1021 In Space Group P21
To Be Published
[
close entry info
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Hetero Components
(4, 87)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
2a: CHLORIDE ION (CLa)
2aa: CHLORIDE ION (CLaa)
2ab: CHLORIDE ION (CLab)
2ac: CHLORIDE ION (CLac)
2ad: CHLORIDE ION (CLad)
2ae: CHLORIDE ION (CLae)
2af: CHLORIDE ION (CLaf)
2ag: CHLORIDE ION (CLag)
2ah: CHLORIDE ION (CLah)
2ai: CHLORIDE ION (CLai)
2aj: CHLORIDE ION (CLaj)
2ak: CHLORIDE ION (CLak)
2al: CHLORIDE ION (CLal)
2am: CHLORIDE ION (CLam)
2an: CHLORIDE ION (CLan)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
2p: CHLORIDE ION (CLp)
2q: CHLORIDE ION (CLq)
2r: CHLORIDE ION (CLr)
2s: CHLORIDE ION (CLs)
2t: CHLORIDE ION (CLt)
2u: CHLORIDE ION (CLu)
2v: CHLORIDE ION (CLv)
2w: CHLORIDE ION (CLw)
2x: CHLORIDE ION (CLx)
2y: CHLORIDE ION (CLy)
2z: CHLORIDE ION (CLz)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
3h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
3i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
3j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
3k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
3l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
11
Ligand/Ion
CALCIUM ION
2
CL
40
Ligand/Ion
CHLORIDE ION
3
MPD
12
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(63, 63)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:96 , ASP A:101 , HOH A:407 , HOH A:412 , HOH A:415
BINDING SITE FOR RESIDUE CA A 301
02
AC2
SOFTWARE
LYS A:163 , SER A:166 , LYS A:167 , PRO D:219 , GLY D:254
BINDING SITE FOR RESIDUE CL A 302
03
AC3
SOFTWARE
GLY A:20 , GLU A:187 , CL A:306 , HOH A:514
BINDING SITE FOR RESIDUE CL A 303
04
AC4
SOFTWARE
LEU A:144 , PRO A:145 , GLU A:146
BINDING SITE FOR RESIDUE CL A 304
05
AC5
SOFTWARE
LEU A:5 , ASN A:6
BINDING SITE FOR RESIDUE CL A 305
06
AC6
SOFTWARE
LYS A:19 , THR A:186 , GLU A:187 , ALA A:188 , CL A:303 , HOH A:559 , HOH A:570
BINDING SITE FOR RESIDUE CL A 306
07
AC7
SOFTWARE
MSE A:212 , GLY A:217 , ILE A:218 , HOH A:478 , HOH A:524
BINDING SITE FOR RESIDUE CL A 307
08
AC8
SOFTWARE
ARG A:118 , GLN A:119
BINDING SITE FOR RESIDUE CL A 308
09
AC9
SOFTWARE
LYS A:167 , HOH A:530 , HOH D:611 , HOH D:690
BINDING SITE FOR RESIDUE CL A 309
10
BC1
SOFTWARE
VAL A:141 , ALA B:259 , CL B:307 , HOH B:545
BINDING SITE FOR RESIDUE CL A 310
11
BC2
SOFTWARE
ASP A:99 , HOH A:425 , HOH C:515
BINDING SITE FOR RESIDUE CL A 311
12
BC3
SOFTWARE
GLY A:130 , GLY A:173 , HOH A:488 , HOH A:561 , HOH A:623
BINDING SITE FOR RESIDUE CL A 312
13
BC4
SOFTWARE
ARG A:115 , ARG A:118 , HOH A:448
BINDING SITE FOR RESIDUE CL A 313
14
BC5
SOFTWARE
PHE A:4 , LEU A:5 , SER C:-1 , PHE D:4 , LEU D:5
BINDING SITE FOR RESIDUE CL A 314
15
BC6
SOFTWARE
THR A:15 , HIS A:82 , HOH A:413
BINDING SITE FOR RESIDUE CL A 315
16
BC7
SOFTWARE
GLN A:139 , TRP A:183 , MPD A:318 , HOH A:581 , HOH A:597
BINDING SITE FOR RESIDUE MPD A 316
17
BC8
SOFTWARE
MSE A:83 , LEU A:84 , GLY A:85 , GLY A:86 , VAL A:135 , TYR A:151 , LYS A:155 , ILE A:184
BINDING SITE FOR RESIDUE MPD A 317
18
BC9
SOFTWARE
GLY A:86 , SER A:87 , SER A:189 , MPD A:316
BINDING SITE FOR RESIDUE MPD A 318
19
CC1
SOFTWARE
ALA B:96 , ASP B:101 , CA B:303 , HOH B:409 , HOH B:421 , HOH B:456 , HOH B:509 , HOH B:615
BINDING SITE FOR RESIDUE CA B 301
20
CC2
SOFTWARE
LYS B:163 , GLY B:246 , VAL C:256 , THR C:258 , HOH C:417 , HOH C:420 , HOH C:470
BINDING SITE FOR RESIDUE CA B 302
21
CC3
SOFTWARE
SER B:98 , ASP B:101 , CA B:301 , HOH B:434 , HOH B:509 , HOH B:529 , HOH B:615
BINDING SITE FOR RESIDUE CA B 303
22
CC4
SOFTWARE
LYS B:163 , SER B:166 , LYS B:167 , PRO C:219 , GLY C:254
BINDING SITE FOR RESIDUE CL B 304
23
CC5
SOFTWARE
THR B:15 , HIS B:82 , HOH B:402
BINDING SITE FOR RESIDUE CL B 305
24
CC6
SOFTWARE
GLY B:20 , GLU B:187 , HOH B:566
BINDING SITE FOR RESIDUE CL B 306
25
CC7
SOFTWARE
CL A:310 , HOH A:435 , ALA B:259 , ARG C:140
BINDING SITE FOR RESIDUE CL B 307
26
CC8
SOFTWARE
ARG B:43 , VAL B:53 , GLU B:54 , HOH B:589
BINDING SITE FOR RESIDUE CL B 308
27
CC9
SOFTWARE
ARG B:115 , ARG B:118 , HOH B:579
BINDING SITE FOR RESIDUE CL B 309
28
DC1
SOFTWARE
GLU B:205
BINDING SITE FOR RESIDUE CL B 310
29
DC2
SOFTWARE
ILE B:2 , PHE B:4 , LEU B:5 , PHE C:4 , LEU C:5 , SER D:-1
BINDING SITE FOR RESIDUE CL B 311
30
DC3
SOFTWARE
LEU B:144 , PRO B:145 , GLU B:146 , HOH B:560
BINDING SITE FOR RESIDUE CL B 312
31
DC4
SOFTWARE
GLN B:139 , TRP B:183 , MPD B:314 , HOH B:552 , HOH B:616
BINDING SITE FOR RESIDUE MPD B 313
32
DC5
SOFTWARE
GLY B:86 , SER B:87 , MPD B:313 , HOH B:555
BINDING SITE FOR RESIDUE MPD B 314
33
DC6
SOFTWARE
MSE B:83 , GLY B:85 , GLY B:86 , THR B:136 , TYR B:151 , LYS B:155 , ILE B:184 , HOH B:465
BINDING SITE FOR RESIDUE MPD B 315
34
DC7
SOFTWARE
ALA C:96 , ASP C:101 , HOH C:437 , HOH C:441 , HOH C:449 , HOH C:522 , HOH C:572
BINDING SITE FOR RESIDUE CA C 301
35
DC8
SOFTWARE
GLY C:216 , GLY C:217 , THR C:255 , HOH C:433 , HOH C:444 , HOH C:531 , HOH C:557
BINDING SITE FOR RESIDUE CA C 302
36
DC9
SOFTWARE
ILE C:184 , THR C:186 , SER C:189 , CL C:310 , MPD C:315 , HOH C:570 , HOH C:590
BINDING SITE FOR RESIDUE CA C 303
37
EC1
SOFTWARE
LYS C:163 , SER C:166 , LYS C:167
BINDING SITE FOR RESIDUE CL C 304
38
EC2
SOFTWARE
THR C:186 , GLU C:187 , ALA C:188 , CL C:309 , HOH C:578 , HOH C:579
BINDING SITE FOR RESIDUE CL C 305
39
EC3
SOFTWARE
HOH B:436 , HOH B:536 , LYS C:167 , HOH C:508 , HOH C:656
BINDING SITE FOR RESIDUE CL C 306
40
EC4
SOFTWARE
ARG B:140 , ALA C:259 , HOH C:646 , VAL D:141 , HOH D:541
BINDING SITE FOR RESIDUE CL C 307
41
EC5
SOFTWARE
GLU A:185 , HOH A:549 , ASP C:203 , LEU C:204
BINDING SITE FOR RESIDUE CL C 308
42
EC6
SOFTWARE
GLY C:20 , GLU C:187 , CL C:305
BINDING SITE FOR RESIDUE CL C 309
43
EC7
SOFTWARE
ILE C:184 , CA C:303 , MPD C:315 , HOH C:564
BINDING SITE FOR RESIDUE CL C 310
44
EC8
SOFTWARE
THR C:15 , HIS C:82 , HOH C:411
BINDING SITE FOR RESIDUE CL C 311
45
EC9
SOFTWARE
HOH A:603 , LEU C:144 , PRO C:145 , GLU C:146
BINDING SITE FOR RESIDUE CL C 312
46
FC1
SOFTWARE
GLN C:139 , LEU C:144 , MPD C:315 , HOH C:563 , HOH C:628
BINDING SITE FOR RESIDUE MPD C 313
47
FC2
SOFTWARE
ASP A:99 , TYR A:103 , PHE C:111 , ARG C:115
BINDING SITE FOR RESIDUE MPD C 314
48
FC3
SOFTWARE
GLY C:86 , SER C:87 , SER C:189 , CA C:303 , CL C:310 , MPD C:313 , HOH C:649
BINDING SITE FOR RESIDUE MPD C 315
49
FC4
SOFTWARE
GLY C:85 , GLY C:86 , THR C:136 , TYR C:151 , LYS C:155 , HOH C:565 , HOH C:573 , HOH C:585 , HOH C:657
BINDING SITE FOR RESIDUE MPD C 316
50
FC5
SOFTWARE
ALA D:96 , ASP D:101 , HOH D:526 , HOH D:532 , HOH D:586 , HOH D:726 , HOH D:735
BINDING SITE FOR RESIDUE CA D 301
51
FC6
SOFTWARE
HOH B:439 , HOH B:613 , HOH D:542 , HOH D:550 , HOH D:577 , HOH D:648
BINDING SITE FOR RESIDUE CA D 302
52
FC7
SOFTWARE
GLY D:216 , HOH D:528 , HOH D:548 , HOH D:597 , HOH D:719
BINDING SITE FOR RESIDUE CA D 303
53
FC8
SOFTWARE
GLY D:173 , HOH D:561 , HOH D:600 , HOH D:628 , HOH D:686
BINDING SITE FOR RESIDUE CA D 304
54
FC9
SOFTWARE
LYS D:163 , SER D:166 , LYS D:167
BINDING SITE FOR RESIDUE CL D 305
55
GC1
SOFTWARE
THR D:186 , GLU D:187 , ALA D:188 , CL D:310
BINDING SITE FOR RESIDUE CL D 306
56
GC2
SOFTWARE
THR D:15 , HIS D:82 , HOH D:658
BINDING SITE FOR RESIDUE CL D 307
57
GC3
SOFTWARE
ILE D:184
BINDING SITE FOR RESIDUE CL D 308
58
GC4
SOFTWARE
GLY D:76 , VAL D:77 , ARG D:127 , HOH D:547 , HOH D:668
BINDING SITE FOR RESIDUE CL D 309
59
GC5
SOFTWARE
GLY D:20 , GLU D:187 , CL D:306
BINDING SITE FOR RESIDUE CL D 310
60
GC6
SOFTWARE
GLN D:72 , ARG D:73
BINDING SITE FOR RESIDUE CL D 311
61
GC7
SOFTWARE
ARG D:115 , ARG D:118 , HOH D:501 , HOH D:537 , HOH D:704
BINDING SITE FOR RESIDUE CL D 312
62
GC8
SOFTWARE
GLN D:139 , MPD D:314 , HOH D:656 , HOH D:731
BINDING SITE FOR RESIDUE MPD D 313
63
GC9
SOFTWARE
GLY D:86 , SER D:87 , SER D:189 , MPD D:313 , HOH D:676
BINDING SITE FOR RESIDUE MPD D 314
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4h15a_ (A:)
1b: SCOP_d4h15b_ (B:)
1c: SCOP_d4h15c_ (C:)
1d: SCOP_d4h15d_ (D:)
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Superfamilies
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Sinorhizobium meliloti [TaxId: 266834]
(11)
1a
d4h15a_
A:
1b
d4h15b_
B:
1c
d4h15c_
C:
1d
d4h15d_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (360 KB)
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