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4H0X
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (256 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NAD+-IA(E380A)-ACTIN COMPLEX
Authors
:
T. Tsurumura, M. Oda, M. Nagahama, H. Tsuge
Date
:
10 Sep 12 (Deposition) - 20 Feb 13 (Release) - 10 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Adp-Ribosyltransferase, Toxin-Structural Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Tsurumura, Y. Tsumori, H. Qiu, M. Oda, J. Sakurai, M. Nagahama, H. Tsuge
Arginine Adp-Ribosylation Mechanism Based On Structural Snapshots Of Iota-Toxin And Actin Complex
Proc. Natl. Acad. Sci. Usa V. 110 4267 2013
[
close entry info
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Hetero Components
(6, 27)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CALCIUM ION (CAa)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
4a: LATRUNCULIN A (LARa)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
6a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
1
Ligand/Ion
CALCIUM ION
3
EDO
22
Ligand/Ion
1,2-ETHANEDIOL
4
LAR
1
Ligand/Ion
LATRUNCULIN A
5
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6
PO4
1
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:251 , ILE A:259 , ARG A:295 , ARG A:296 , GLY A:298 , GLN A:300 , GLU A:301 , ASN A:335 , SER A:338 , THR A:339 , PHE A:349 , ARG A:352 , EDO A:503
BINDING SITE FOR RESIDUE NAD A 501
02
AC2
SOFTWARE
ARG A:5 , TRP A:19 , GLU A:23 , ILE A:85 , ASP A:86 , HOH A:680
BINDING SITE FOR RESIDUE PO4 A 502
03
AC3
SOFTWARE
TYR A:294 , ARG A:296 , SER A:340 , GLY A:342 , SER A:343 , VAL A:344 , PHE A:349 , NAD A:501
BINDING SITE FOR RESIDUE EDO A 503
04
AC4
SOFTWARE
MET A:346 , SER A:347 , ALA A:348 , MET B:176 , ARG B:177
BINDING SITE FOR RESIDUE EDO A 504
05
AC5
SOFTWARE
TYR A:60 , ASP A:61 , MET A:346 , SER A:347 , HOH A:697 , MET B:176 , LYS B:284
BINDING SITE FOR RESIDUE EDO A 505
06
AC6
SOFTWARE
ILE A:80 , THR A:164 , GLY A:165 , GLU A:180 , ASP A:182 , HOH A:608
BINDING SITE FOR RESIDUE EDO A 506
07
AC7
SOFTWARE
TYR A:42 , SER A:46 , TYR A:169 , ASN A:171 , LYS A:176
BINDING SITE FOR RESIDUE EDO A 507
08
AC8
SOFTWARE
TYR A:60 , GLN A:63 , ASN A:345 , ALA A:350 , LYS A:351 , ASP A:399 , HOH A:626 , HOH A:634 , GLU B:276
BINDING SITE FOR RESIDUE EDO A 508
09
AC9
SOFTWARE
ASN A:90 , HIS A:157 , GLU A:204 , ALA A:205
BINDING SITE FOR RESIDUE EDO A 509
10
BC1
SOFTWARE
LYS A:159 , SER A:206 , ILE A:207
BINDING SITE FOR RESIDUE EDO A 510
11
BC2
SOFTWARE
LYS A:132 , ASP A:182 , TYR A:183 , SER A:184 , SER A:210 , HOH A:609 , HOH A:673
BINDING SITE FOR RESIDUE EDO A 511
12
BC3
SOFTWARE
ATP B:402 , HOH B:521 , HOH B:522 , HOH B:524 , HOH B:525 , HOH B:526
BINDING SITE FOR RESIDUE CA B 401
13
BC4
SOFTWARE
GLY B:13 , SER B:14 , GLY B:15 , LEU B:16 , LYS B:18 , GLY B:156 , ASP B:157 , GLY B:158 , VAL B:159 , GLY B:182 , ARG B:210 , LYS B:213 , GLU B:214 , GLY B:301 , GLY B:302 , THR B:303 , MET B:305 , TYR B:306 , LYS B:336 , CA B:401 , EDO B:414 , HOH B:518 , HOH B:521 , HOH B:522 , HOH B:526 , HOH B:527 , HOH B:558 , HOH B:559
BINDING SITE FOR RESIDUE ATP B 402
14
BC5
SOFTWARE
GLY B:15 , LEU B:16 , PRO B:32 , ASP B:56 , GLN B:59 , ARG B:62 , LEU B:67 , TYR B:69 , ASP B:157 , ARG B:183 , THR B:186 , ARG B:206 , GLU B:207 , ARG B:210 , HOH B:555
BINDING SITE FOR RESIDUE LAR B 403
15
BC6
SOFTWARE
HIS B:73 , GLY B:158 , ASP B:184 , HOH B:581
BINDING SITE FOR RESIDUE EDO B 404
16
BC7
SOFTWARE
ARG B:183 , ARG B:206
BINDING SITE FOR RESIDUE EDO B 405
17
BC8
SOFTWARE
SER B:141 , LEU B:142 , SER B:145 , VAL B:298 , MET B:299 , SER B:300 , PRO B:332 , SER B:338
BINDING SITE FOR RESIDUE EDO B 406
18
BC9
SOFTWARE
MET B:283 , ARG B:290 , TYR B:294 , PRO B:322
BINDING SITE FOR RESIDUE EDO B 407
19
CC1
SOFTWARE
THR B:318 , ALA B:321 , PRO B:322 , SER B:323 , MET B:325 , ILE B:327
BINDING SITE FOR RESIDUE EDO B 408
20
CC2
SOFTWARE
THR B:148 , THR B:149 , ASN B:296 , HOH B:585
BINDING SITE FOR RESIDUE EDO B 409
21
CC3
SOFTWARE
ARG B:62 , TYR B:166 , THR B:203 , ALA B:204 , ASP B:288 , ASP B:292 , HOH B:539
BINDING SITE FOR RESIDUE EDO B 410
22
CC4
SOFTWARE
GLU B:83 , HIS B:87 , EDO B:412
BINDING SITE FOR RESIDUE EDO B 411
23
CC5
SOFTWARE
TYR B:91 , GLU B:99 , THR B:126 , PHE B:127 , SER B:350 , EDO B:411
BINDING SITE FOR RESIDUE EDO B 412
24
CC6
SOFTWARE
TYR B:198 , SER B:199 , PHE B:200
BINDING SITE FOR RESIDUE EDO B 413
25
CC7
SOFTWARE
LYS B:213 , GLU B:214 , CYS B:217 , MET B:305 , TYR B:306 , PRO B:307 , ATP B:402 , HOH B:516
BINDING SITE FOR RESIDUE EDO B 414
26
CC8
SOFTWARE
GLN B:263 , PRO B:264 , SER B:265 , EDO B:416 , HOH B:590
BINDING SITE FOR RESIDUE EDO B 415
27
CC9
SOFTWARE
LYS A:351 , PHE B:262 , ALA B:272 , GLY B:273 , HIS B:275 , GLU B:276 , EDO B:415
BINDING SITE FOR RESIDUE EDO B 416
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4h0xa1 (A:1-209)
1b: SCOP_d4h0xa2 (A:210-413)
2a: SCOP_d4h0xb1 (B:5-146)
2b: SCOP_d4h0xb2 (B:147-374)
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Classes
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(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ADP-ribosylation
(157)
Superfamily
:
ADP-ribosylation
(157)
Family
:
ADP-ribosylating toxins
(85)
Protein domain
:
automated matches
(21)
Clostridium perfringens [TaxId: 1502]
(6)
1a
d4h0xa1
A:1-209
1b
d4h0xa2
A:210-413
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
2a
d4h0xb1
B:5-146
2b
d4h0xb2
B:147-374
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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