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4H0M
Asym. Unit
Info
Asym.Unit (662 KB)
Biol.Unit 1 (328 KB)
Biol.Unit 2 (327 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF PHYCOCYANIN FROM SYNECHOCOCCUS ELONGATUS SP. PCC 7942
Authors
:
A. Marx, N. Adir
Date
:
09 Sep 12 (Deposition) - 06 Mar 13 (Release) - 06 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Component Of The Phycobilisome, Photosynthetic Antenna Complex, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Marx, N. Adir
Allophycocyanin And Phycocyanin Crystal Structures Reveal Facets Of Phycobilisome Assembly.
Biochim. Biophys. Acta V. 1827 311 2013
[
close entry info
]
Hetero Components
(2, 48)
Info
All Hetero Components
1a: PHYCOCYANOBILIN (CYCa)
1aa: PHYCOCYANOBILIN (CYCaa)
1ab: PHYCOCYANOBILIN (CYCab)
1ac: PHYCOCYANOBILIN (CYCac)
1ad: PHYCOCYANOBILIN (CYCad)
1ae: PHYCOCYANOBILIN (CYCae)
1af: PHYCOCYANOBILIN (CYCaf)
1ag: PHYCOCYANOBILIN (CYCag)
1ah: PHYCOCYANOBILIN (CYCah)
1ai: PHYCOCYANOBILIN (CYCai)
1aj: PHYCOCYANOBILIN (CYCaj)
1b: PHYCOCYANOBILIN (CYCb)
1c: PHYCOCYANOBILIN (CYCc)
1d: PHYCOCYANOBILIN (CYCd)
1e: PHYCOCYANOBILIN (CYCe)
1f: PHYCOCYANOBILIN (CYCf)
1g: PHYCOCYANOBILIN (CYCg)
1h: PHYCOCYANOBILIN (CYCh)
1i: PHYCOCYANOBILIN (CYCi)
1j: PHYCOCYANOBILIN (CYCj)
1k: PHYCOCYANOBILIN (CYCk)
1l: PHYCOCYANOBILIN (CYCl)
1m: PHYCOCYANOBILIN (CYCm)
1n: PHYCOCYANOBILIN (CYCn)
1o: PHYCOCYANOBILIN (CYCo)
1p: PHYCOCYANOBILIN (CYCp)
1q: PHYCOCYANOBILIN (CYCq)
1r: PHYCOCYANOBILIN (CYCr)
1s: PHYCOCYANOBILIN (CYCs)
1t: PHYCOCYANOBILIN (CYCt)
1u: PHYCOCYANOBILIN (CYCu)
1v: PHYCOCYANOBILIN (CYCv)
1w: PHYCOCYANOBILIN (CYCw)
1x: PHYCOCYANOBILIN (CYCx)
1y: PHYCOCYANOBILIN (CYCy)
1z: PHYCOCYANOBILIN (CYCz)
2a: N-METHYL ASPARAGINE (MENa)
2b: N-METHYL ASPARAGINE (MENb)
2c: N-METHYL ASPARAGINE (MENc)
2d: N-METHYL ASPARAGINE (MENd)
2e: N-METHYL ASPARAGINE (MENe)
2f: N-METHYL ASPARAGINE (MENf)
2g: N-METHYL ASPARAGINE (MENg)
2h: N-METHYL ASPARAGINE (MENh)
2i: N-METHYL ASPARAGINE (MENi)
2j: N-METHYL ASPARAGINE (MENj)
2k: N-METHYL ASPARAGINE (MENk)
2l: N-METHYL ASPARAGINE (MENl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CYC
36
Ligand/Ion
PHYCOCYANOBILIN
2
MEN
12
Mod. Amino Acid
N-METHYL ASPARAGINE
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:59 , THR A:66 , ASN A:72 , ASN A:73 , PHE A:74 , ALA A:75 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , ILE A:88 , TYR A:90 , TYR A:110 , ILE A:118 , PHE A:122 , TRP A:128 , TYR A:129 , ARG D:57 , TYR D:74 , THR D:75 , ASN D:76 , MET D:79
BINDING SITE FOR RESIDUE CYC A 201
02
AC2
SOFTWARE
LEU B:66 , MEN B:72 , ALA B:73 , ARG B:77 , ARG B:78 , CYS B:82 , ARG B:84 , ASP B:85 , MET B:86 , ILE B:88 , ARG B:108 , LEU B:113 , LEU B:120 , SER B:126 , VAL B:127 , HOH B:312 , HOH B:340
BINDING SITE FOR RESIDUE CYC B 201
03
AC3
SOFTWARE
PHE A:28 , ASN B:35 , LYS B:36 , ASP B:39 , ASN B:42 , ARG B:43 , VAL B:142 , ASP B:144 , ILE B:148 , THR B:149 , GLN B:150 , GLY B:151 , CYS B:153 , HOH B:305 , GLN K:33 , ASP K:145 , ASP K:148
BINDING SITE FOR RESIDUE CYC B 202
04
AC4
SOFTWARE
VAL C:59 , THR C:66 , ASN C:72 , ASN C:73 , PHE C:74 , ALA C:75 , LYS C:83 , CYS C:84 , ARG C:86 , ASP C:87 , TYR C:110 , ILE C:118 , PHE C:122 , LEU C:124 , TRP C:128 , TYR C:129 , HOH C:301 , HOH C:322 , ARG F:57 , ILE F:67 , TYR F:74 , THR F:75 , ASN F:76 , HOH F:309
BINDING SITE FOR RESIDUE CYC C 201
05
AC5
SOFTWARE
LEU D:66 , MEN D:72 , ARG D:78 , CYS D:82 , ARG D:84 , ASP D:85 , MET D:86 , ILE D:88 , ARG D:108 , LEU D:113 , LEU D:120 , VAL D:122 , SER D:126
BINDING SITE FOR RESIDUE CYC D 201
06
AC6
SOFTWARE
PHE C:28 , ASN D:35 , LYS D:36 , ASP D:39 , ASN D:42 , VAL D:142 , SER D:143 , ASP D:144 , ILE D:148 , THR D:149 , GLY D:151 , CYS D:153 , HOH D:301 , HOH D:304 , HOH D:318 , ARG I:32 , GLN I:33 , ASP I:145 , ASP I:148 , GLU I:149
BINDING SITE FOR RESIDUE CYC D 202
07
AC7
SOFTWARE
ARG B:57 , THR B:75 , ASN B:76 , VAL E:59 , THR E:66 , ASN E:72 , ASN E:73 , PHE E:74 , ALA E:75 , LYS E:83 , CYS E:84 , ARG E:86 , ASP E:87 , TYR E:90 , TYR E:110 , PHE E:122 , LEU E:124 , TRP E:128 , HOH E:301 , HOH E:339
BINDING SITE FOR RESIDUE CYC E 201
08
AC8
SOFTWARE
MEN F:72 , ARG F:78 , CYS F:82 , ARG F:84 , ASP F:85 , ILE F:88 , ARG F:108 , LEU F:113 , LEU F:120 , PRO F:123 , SER F:126
BINDING SITE FOR RESIDUE CYC F 201
09
AC9
SOFTWARE
PHE E:28 , ASN F:35 , LYS F:36 , ASP F:39 , THR F:40 , ARG F:43 , VAL F:142 , SER F:143 , ASP F:144 , THR F:149 , GLY F:151 , CYS F:153 , ARG G:32 , GLN G:33 , ASP G:145 , ASP G:148
BINDING SITE FOR RESIDUE CYC F 202
10
BC1
SOFTWARE
VAL G:59 , THR G:66 , ASN G:72 , ASN G:73 , PHE G:74 , ALA G:75 , LYS G:83 , CYS G:84 , ASP G:87 , TYR G:90 , TYR G:110 , LEU G:111 , PHE G:122 , LEU G:124 , TRP G:128 , TYR G:129 , HOH G:301 , HOH G:303 , ARG J:57 , ILE J:67 , TYR J:74 , THR J:75 , ASN J:76
BINDING SITE FOR RESIDUE CYC G 201
11
BC2
SOFTWARE
LEU H:66 , MEN H:72 , ALA H:73 , ARG H:77 , ARG H:78 , CYS H:82 , ASP H:85 , MET H:86 , ILE H:88 , ARG H:108 , LEU H:113 , LEU H:120 , VAL H:122 , SER H:126
BINDING SITE FOR RESIDUE CYC H 201
12
BC3
SOFTWARE
ARG E:32 , GLN E:33 , ASP E:145 , ASP E:148 , LEU G:24 , PHE G:28 , ASN H:35 , LYS H:36 , ASP H:39 , THR H:40 , ARG H:43 , VAL H:142 , SER H:143 , ASP H:144 , THR H:149 , GLY H:151 , CYS H:153 , HOH H:310 , HOH H:316
BINDING SITE FOR RESIDUE CYC H 202
13
BC4
SOFTWARE
VAL I:59 , THR I:66 , ASN I:72 , ASN I:73 , PHE I:74 , ALA I:75 , LYS I:83 , CYS I:84 , ARG I:86 , ASP I:87 , ILE I:88 , TYR I:90 , TYR I:110 , PHE I:122 , TRP I:128 , TYR I:129 , HOH I:303 , HOH I:307 , ARG L:57 , ILE L:67 , TYR L:74 , THR L:75 , ASN L:76
BINDING SITE FOR RESIDUE CYC I 201
14
BC5
SOFTWARE
LEU J:66 , MEN J:72 , ALA J:73 , ARG J:77 , ARG J:78 , CYS J:82 , ASP J:85 , MET J:86 , ARG J:108 , LEU J:113 , LEU J:120 , PRO J:123 , SER J:126 , VAL J:127
BINDING SITE FOR RESIDUE CYC J 201
15
BC6
SOFTWARE
ARG C:32 , GLN C:33 , ASP C:145 , ASP C:148 , PHE I:28 , ASN J:35 , LYS J:36 , ASP J:39 , ASN J:42 , VAL J:142 , SER J:143 , ASP J:144 , THR J:149 , GLN J:150 , GLY J:151 , CYS J:153 , HOH J:314 , HOH J:315
BINDING SITE FOR RESIDUE CYC J 202
16
BC7
SOFTWARE
ARG H:57 , ILE H:67 , TYR H:74 , THR H:75 , ASN H:76 , THR K:66 , ASN K:72 , ASN K:73 , PHE K:74 , ALA K:75 , LYS K:83 , CYS K:84 , ARG K:86 , ASP K:87 , TYR K:110 , PHE K:122 , LEU K:124 , TRP K:128 , TYR K:129 , HOH K:301 , HOH K:304 , HOH K:311
BINDING SITE FOR RESIDUE CYC K 201
17
BC8
SOFTWARE
MEN L:72 , ALA L:73 , ARG L:78 , CYS L:82 , ASP L:85 , MET L:86 , ILE L:88 , ARG L:108 , CYS L:109 , LEU L:120 , PRO L:123 , SER L:126
BINDING SITE FOR RESIDUE CYC L 201
18
BC9
SOFTWARE
ARG A:32 , GLN A:33 , ASP A:145 , ASP A:148 , PHE K:28 , ASN L:35 , LYS L:36 , ASP L:39 , ARG L:43 , VAL L:142 , SER L:143 , ASP L:144 , ARG L:145 , THR L:149 , GLY L:151 , CYS L:153 , HOH L:309
BINDING SITE FOR RESIDUE CYC L 202
19
CC1
SOFTWARE
VAL M:59 , THR M:66 , ASN M:72 , ASN M:73 , PHE M:74 , ALA M:75 , CYS M:84 , ARG M:86 , ASP M:87 , TYR M:90 , TYR M:110 , PHE M:122 , LEU M:124 , TRP M:128 , TYR M:129 , HOH M:301 , HOH M:310 , HOH M:316 , ARG P:57 , TYR P:74 , ASN P:76
BINDING SITE FOR RESIDUE CYC M 201
20
CC2
SOFTWARE
MEN N:72 , ALA N:73 , ARG N:77 , ARG N:78 , CYS N:82 , ASP N:85 , MET N:86 , ILE N:88 , ARG N:108 , LEU N:113 , SER N:126 , HOH N:303
BINDING SITE FOR RESIDUE CYC N 201
21
CC3
SOFTWARE
LEU M:24 , PHE M:28 , ASN N:35 , LYS N:36 , ASP N:39 , THR N:40 , ASN N:42 , ARG N:43 , VAL N:142 , SER N:143 , ASP N:144 , ILE N:148 , THR N:149 , GLN N:150 , GLY N:151 , CYS N:153 , GLN W:33 , ASP W:145 , ASP W:148
BINDING SITE FOR RESIDUE CYC N 202
22
CC4
SOFTWARE
THR O:66 , ASN O:72 , ASN O:73 , PHE O:74 , ALA O:75 , LYS O:83 , CYS O:84 , ARG O:86 , ASP O:87 , TYR O:90 , TYR O:110 , TRP O:128 , TYR O:129 , HOH O:301 , HOH O:305 , HOH O:333 , ARG R:57 , ILE R:67 , THR R:75 , ASN R:76 , HOH R:309
BINDING SITE FOR RESIDUE CYC O 201
23
CC5
SOFTWARE
LEU P:66 , MEN P:72 , ALA P:73 , ARG P:77 , CYS P:82 , ARG P:84 , ASP P:85 , MET P:86 , ILE P:88 , ARG P:108 , LEU P:120 , VAL P:122 , SER P:126
BINDING SITE FOR RESIDUE CYC P 201
24
CC6
SOFTWARE
PHE O:28 , ASN P:35 , LYS P:36 , ASP P:39 , VAL P:142 , SER P:143 , ASP P:144 , ARG P:145 , THR P:149 , GLY P:151 , CYS P:153 , HOH P:309 , HOH P:316 , GLN U:33 , ASP U:145 , ASP U:148 , HOH U:333
BINDING SITE FOR RESIDUE CYC P 202
25
CC7
SOFTWARE
ARG N:57 , TYR N:74 , THR N:75 , ASN N:76 , VAL Q:59 , THR Q:66 , ASN Q:72 , ASN Q:73 , PHE Q:74 , ALA Q:75 , LYS Q:83 , CYS Q:84 , ARG Q:86 , ASP Q:87 , TYR Q:90 , TYR Q:110 , LEU Q:111 , PHE Q:122 , LEU Q:124 , TRP Q:128 , TYR Q:129 , HOH Q:301 , HOH Q:323 , HOH Q:325
BINDING SITE FOR RESIDUE CYC Q 201
26
CC8
SOFTWARE
MEN R:72 , ALA R:73 , ARG R:78 , ALA R:81 , CYS R:82 , ARG R:84 , ASP R:85 , MET R:86 , ILE R:88 , ARG R:108 , CYS R:109 , LEU R:120 , VAL R:122 , SER R:126 , HOH R:302
BINDING SITE FOR RESIDUE CYC R 201
27
CC9
SOFTWARE
PHE Q:28 , ASN R:35 , LYS R:36 , ASP R:39 , THR R:40 , VAL R:142 , SER R:143 , ILE R:148 , THR R:149 , GLY R:151 , CYS R:153 , HOH R:313 , GLN S:33 , ASP S:145 , ASP S:148 , GLU S:149 , HOH S:318
BINDING SITE FOR RESIDUE CYC R 202
28
DC1
SOFTWARE
THR S:66 , ASN S:72 , ASN S:73 , PHE S:74 , ALA S:75 , LYS S:83 , CYS S:84 , ARG S:86 , ASP S:87 , TYR S:90 , ILE S:94 , TYR S:110 , PHE S:122 , LEU S:124 , TYR S:129 , HOH S:306 , HOH S:338 , ARG V:57 , ILE V:67 , THR V:75 , ASN V:76 , HOH V:314
BINDING SITE FOR RESIDUE CYC S 201
29
DC2
SOFTWARE
MEN T:72 , ARG T:77 , ARG T:78 , ALA T:81 , CYS T:82 , ASP T:85 , MET T:86 , ILE T:88 , ARG T:108 , LEU T:120 , VAL T:122 , SER T:126
BINDING SITE FOR RESIDUE CYC T 201
30
DC3
SOFTWARE
ARG Q:32 , GLN Q:33 , ASP Q:145 , ASP Q:148 , GLU Q:149 , HOH Q:320 , PHE S:28 , ASN T:35 , LYS T:36 , ASP T:39 , VAL T:142 , SER T:143 , ASP T:144 , THR T:149 , GLN T:150 , GLY T:151 , CYS T:153 , HOH T:313 , HOH T:314
BINDING SITE FOR RESIDUE CYC T 202
31
DC4
SOFTWARE
VAL U:59 , THR U:66 , ASN U:72 , ASN U:73 , PHE U:74 , ALA U:75 , LYS U:83 , CYS U:84 , ARG U:86 , ASP U:87 , ILE U:88 , TYR U:110 , PHE U:122 , TRP U:128 , TYR U:129 , HOH U:321 , HOH U:325 , ARG X:57 , THR X:75 , ASN X:76 , HOH X:324
BINDING SITE FOR RESIDUE CYC U 201
32
DC5
SOFTWARE
MEN V:72 , ALA V:73 , ARG V:78 , CYS V:82 , ASP V:85 , ILE V:88 , ARG V:108 , LEU V:113 , LEU V:120 , VAL V:122 , SER V:126 , HOH V:329
BINDING SITE FOR RESIDUE CYC V 201
33
DC6
SOFTWARE
GLN O:33 , ASP O:145 , ASP O:148 , PHE U:28 , ALA V:32 , ASN V:35 , ASP V:39 , THR V:40 , ARG V:43 , VAL V:142 , ASP V:144 , THR V:149 , GLN V:150 , GLY V:151 , CYS V:153 , HOH V:306
BINDING SITE FOR RESIDUE CYC V 202
34
DC7
SOFTWARE
ARG T:57 , ILE T:67 , TYR T:74 , ASN T:76 , HOH T:318 , THR W:66 , ASN W:72 , ASN W:73 , PHE W:74 , ALA W:75 , LYS W:83 , CYS W:84 , ARG W:86 , ASP W:87 , TYR W:110 , PHE W:122 , LEU W:124 , TRP W:128 , TYR W:129 , HOH W:301 , HOH W:327
BINDING SITE FOR RESIDUE CYC W 201
35
DC8
SOFTWARE
MEN X:72 , ALA X:73 , ARG X:77 , ARG X:78 , CYS X:82 , ARG X:84 , ASP X:85 , MET X:86 , ILE X:88 , ARG X:108 , LEU X:113 , LEU X:120 , PRO X:123 , SER X:126
BINDING SITE FOR RESIDUE CYC X 201
36
DC9
SOFTWARE
GLN M:33 , ASP M:145 , ASP M:148 , PHE W:28 , ASN X:35 , LYS X:36 , ASP X:39 , THR X:40 , VAL X:142 , SER X:143 , ASP X:144 , THR X:149 , GLY X:151 , CYS X:153 , HOH X:301 , HOH X:315
BINDING SITE FOR RESIDUE CYC X 202
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d4h0ma_ (A:)
1b: SCOP_d4h0mb_ (B:)
1c: SCOP_d4h0mk_ (K:)
1d: SCOP_d4h0ml_ (L:)
1e: SCOP_d4h0mm_ (M:)
1f: SCOP_d4h0mn_ (N:)
1g: SCOP_d4h0mo_ (O:)
1h: SCOP_d4h0mp_ (P:)
1i: SCOP_d4h0mq_ (Q:)
1j: SCOP_d4h0mr_ (R:)
1k: SCOP_d4h0ms_ (S:)
1l: SCOP_d4h0mt_ (T:)
1m: SCOP_d4h0mc_ (C:)
1n: SCOP_d4h0mu_ (U:)
1o: SCOP_d4h0mv_ (V:)
1p: SCOP_d4h0mw_ (W:)
1q: SCOP_d4h0mx_ (X:)
1r: SCOP_d4h0md_ (D:)
1s: SCOP_d4h0me_ (E:)
1t: SCOP_d4h0mf_ (F:)
1u: SCOP_d4h0mg_ (G:)
1v: SCOP_d4h0mh_ (H:)
1w: SCOP_d4h0mi_ (I:)
1x: SCOP_d4h0mj_ (J:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
automated matches
(19)
Synechococcus elongatus [TaxId: 1140]
(2)
1a
d4h0ma_
A:
1b
d4h0mb_
B:
1c
d4h0mk_
K:
1d
d4h0ml_
L:
1e
d4h0mm_
M:
1f
d4h0mn_
N:
1g
d4h0mo_
O:
1h
d4h0mp_
P:
1i
d4h0mq_
Q:
1j
d4h0mr_
R:
1k
d4h0ms_
S:
1l
d4h0mt_
T:
1m
d4h0mc_
C:
1n
d4h0mu_
U:
1o
d4h0mv_
V:
1p
d4h0mw_
W:
1q
d4h0mx_
X:
1r
d4h0md_
D:
1s
d4h0me_
E:
1t
d4h0mf_
F:
1u
d4h0mg_
G:
1v
d4h0mh_
H:
1w
d4h0mi_
I:
1x
d4h0mj_
J:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
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pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (662 KB)
Header - Asym.Unit
Biol.Unit 1 (328 KB)
Header - Biol.Unit 1
Biol.Unit 2 (327 KB)
Header - Biol.Unit 2
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