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4H0L
Asym. Unit
Info
Asym.Unit (341 KB)
Biol.Unit 1 (641 KB)
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(1)
Title
:
CYTOCHROME B6F COMPLEX CRYSTAL STRUCTURE FROM MASTIGOCLADUS LAMINOSUS WITH N-SIDE INHIBITOR NQNO
Authors
:
S. S. Hasan, E. Yamashita, D. Baniulis, W. A. Cramer
Date
:
08 Sep 12 (Deposition) - 13 Feb 13 (Release) - 03 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (2x)
Keywords
:
Alpha-Helix, Beta -Sheet, Plastoquinol-Plastocyanin Oxidoreductase, Plastocyanin, None, Thylakoid Membranes, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. S. Hasan, E. Yamashita, D. Baniulis, W. A. Cramer
Quinone-Dependent Proton Transfer Pathways In The Photosynthetic Cytochrome B6F Complex
Proc. Natl. Acad. Sci. Usa V. 110 4297 2013
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Hetero Components
(9, 17)
Info
All Hetero Components
1a: BETA-CAROTENE (BCRa)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
3a: CHLOROPHYLL A (CLAa)
4a: FE2/S2 (INORGANIC) CLUSTER (FESa)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
5d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
6a: (7R,17E)-4-HYDROXY-N,N,N,7-TETRAME... (OPCa)
6b: (7R,17E)-4-HYDROXY-N,N,N,7-TETRAME... (OPCb)
7a: 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE (QNOa)
8a: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDa)
9a: UNDECYL-MALTOSIDE (UMQa)
9b: UNDECYL-MALTOSIDE (UMQb)
9c: UNDECYL-MALTOSIDE (UMQc)
9d: UNDECYL-MALTOSIDE (UMQd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCR
1
Ligand/Ion
BETA-CAROTENE
2
CD
2
Ligand/Ion
CADMIUM ION
3
CLA
1
Ligand/Ion
CHLOROPHYLL A
4
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
5
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
OPC
2
Ligand/Ion
(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE
7
QNO
1
Ligand/Ion
2-NONYL-4-HYDROXYQUINOLINE N-OXIDE
8
SQD
1
Ligand/Ion
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
9
UMQ
4
Ligand/Ion
UNDECYL-MALTOSIDE
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:75 , HOH A:401 , LYS C:140 , HIS C:143
BINDING SITE FOR RESIDUE CD A 301
02
AC2
SOFTWARE
GLN A:47 , GLY A:51 , PHE A:52 , MET A:54 , ARG A:83 , HIS A:86 , ARG A:87 , ALA A:90 , MET A:93 , PHE A:131 , GLY A:135 , LEU A:138 , PRO A:139 , HIS A:187 , THR A:188 , PHE A:189
BINDING SITE FOR RESIDUE HEM A 302
03
AC3
SOFTWARE
TYR A:34 , GLY A:37 , GLY A:38 , MET A:93 , HIS A:100 , VAL A:101 , ARG A:103 , VAL A:104 , GLY A:109 , ARG A:114 , THR A:117 , TRP A:118 , GLY A:121 , VAL A:122 , ALA A:125 , HIS A:202 , PHE A:203 , ILE A:206 , ILE A:211 , SER A:212 , HEM A:304 , HOH A:402
BINDING SITE FOR RESIDUE HEM A 303
04
AC4
SOFTWARE
VAL A:30 , TYR A:34 , CYS A:35 , GLY A:38 , LEU A:41 , PHE A:203 , ILE A:206 , ARG A:207 , GLY A:210 , ILE A:211 , HEM A:303 , QNO A:308 , HOH A:402 , ASN B:25 , VAL B:39 , PHE B:40 , ARG H:26
BINDING SITE FOR RESIDUE HEM A 304
05
AC5
SOFTWARE
MET A:92 , CYS B:50 , GLN C:38 , TYR E:8 , GLU F:3 , TYR F:7 , VAL F:18 , LEU G:5 , LEU G:9 , BCR G:101 , TRP H:8 , PHE H:15
BINDING SITE FOR RESIDUE OPC A 305
06
AC6
SOFTWARE
LEU A:12 , ASP A:20 , LYS A:24 , LYS A:208
BINDING SITE FOR RESIDUE UMQ A 306
07
AC7
SOFTWARE
TYR A:5 , ASP A:6 , ILE A:14 , GLN A:15 , UMQ A:309
BINDING SITE FOR RESIDUE UMQ A 307
08
AC8
SOFTWARE
LYS A:24 , ARG A:207 , HEM A:304 , LEU B:36 , PHE B:40
BINDING SITE FOR RESIDUE QNO A 308
09
AC9
SOFTWARE
UMQ A:307 , TRP B:32 , GLU C:286 , SQD D:201
BINDING SITE FOR RESIDUE UMQ A 309
10
BC1
SOFTWARE
ASP B:58 , LYS C:146 , GLU F:4
BINDING SITE FOR RESIDUE CD B 201
11
BC2
SOFTWARE
TYR A:105 , TYR B:80 , VAL B:84 , ILE B:87 , MET B:101 , VAL B:104 , PRO B:105 , LEU B:108 , ILE B:132 , PHE B:133 , GLY B:136 , THR B:140 , OPC B:203 , HOH B:301 , HOH B:303
BINDING SITE FOR RESIDUE CLA B 202
12
BC3
SOFTWARE
TYR A:105 , LEU B:100 , SER B:103 , VAL B:111 , ILE B:114 , GLU B:115 , ASN B:118 , ARG B:126 , PRO B:127 , VAL B:128 , ALA B:129 , CLA B:202
BINDING SITE FOR RESIDUE OPC B 203
13
BC4
SOFTWARE
ASN A:74 , GLU A:75 , TRP A:80 , ASP C:251 , ASN C:253 , TRP C:257 , GLY D:33 , ALA D:34 , PRO D:37
BINDING SITE FOR RESIDUE UMQ C 301
14
BC5
SOFTWARE
TYR C:1 , PRO C:2 , TRP C:4 , ALA C:5 , CYS C:22 , CYS C:25 , HIS C:26 , GLN C:60 , LEU C:70 , ASN C:71 , VAL C:72 , GLY C:73 , ALA C:74 , ASN C:154 , GLY C:156 , ARG C:157 , GLY C:158 , ILE C:160 , TYR C:161
BINDING SITE FOR RESIDUE HEM C 302
15
BC6
SOFTWARE
CYS D:108 , HIS D:110 , LEU D:111 , CYS D:126 , HIS D:129 , GLY D:130 , SER D:131
BINDING SITE FOR RESIDUE FES D 200
16
BC7
SOFTWARE
UMQ A:309 , TRP B:32 , PRO B:33 , LEU B:37 , TYR B:38 , LYS C:275 , VAL C:279 , ARG D:16 , ASN D:20 , PHE D:24 , GLY D:25 , THR D:28
BINDING SITE FOR RESIDUE SQD D 201
17
BC8
SOFTWARE
ILE A:32 , PHE A:33 , ILE A:39 , MET A:96 , LEU A:99 , OPC A:305 , ILE F:16 , PHE F:17 , TRP F:20 , ALA G:16 , GLY G:19 , GLY G:20 , TYR G:23 , PHE H:15
BINDING SITE FOR RESIDUE BCR G 101
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (341 KB)
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