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Asym. Unit
Info
Asym.Unit (272 KB)
Biol.Unit 1 (261 KB)
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(1)
Title
:
N2 NEURAMINIDASE D151G MUTANT OF A/TANZANIA/205/2010 H3N2 IN COMPLEX WITH AVIAN SIALIC ACID RECEPTOR
Authors
:
X. Zhu, I. A. Wilson
Date
:
06 Sep 12 (Deposition) - 17 Oct 12 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta-Propella, Influenza Virus, Neuraminidase, Hemagglutinin, Hemadsorption, Viral Infection, Sialic Acid Receptor, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, R. Mcbride, C. M. Nycholat, W. Yu, J. C. Paulson, I. A. Wilson
Influenza Virus Neuraminidases With Reduced Enzymatic Activity That Avidly Bind Sialic Acid Receptors.
J. Virol. V. 86 13371 2012
[
close entry info
]
Hetero Components
(7, 50)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
3a: ALPHA-L-FUCOSE (FUCa)
4a: BETA-D-GALACTOSE (GALa)
4b: BETA-D-GALACTOSE (GALb)
4c: BETA-D-GALACTOSE (GALc)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
5g: ALPHA-D-MANNOSE (MANg)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6q: N-ACETYL-D-GLUCOSAMINE (NAGq)
6r: N-ACETYL-D-GLUCOSAMINE (NAGr)
6s: N-ACETYL-D-GLUCOSAMINE (NAGs)
6t: N-ACETYL-D-GLUCOSAMINE (NAGt)
6u: N-ACETYL-D-GLUCOSAMINE (NAGu)
6v: N-ACETYL-D-GLUCOSAMINE (NAGv)
6w: N-ACETYL-D-GLUCOSAMINE (NAGw)
6x: N-ACETYL-D-GLUCOSAMINE (NAGx)
6y: N-ACETYL-D-GLUCOSAMINE (NAGy)
6z: N-ACETYL-D-GLUCOSAMINE (NAGz)
7a: O-SIALIC ACID (SIAa)
7b: O-SIALIC ACID (SIAb)
7c: O-SIALIC ACID (SIAc)
7d: O-SIALIC ACID (SIAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
5
Ligand/Ion
CALCIUM ION
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
5
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
26
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SIA
4
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(49, 49)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:118 , GLU A:119 , ARG A:152 , ARG A:224 , GLU A:276 , ARG A:292 , ARG A:371 , TYR A:406 , GAL A:503
BINDING SITE FOR RESIDUE SIA A 501
02
AC2
SOFTWARE
GAL A:503 , HOH A:963
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
ARG A:118 , SIA A:501 , NAG A:502 , HOH A:901 , HOH A:963
BINDING SITE FOR RESIDUE GAL A 503
04
AC4
SOFTWARE
ASN A:200 , NAG A:505 , TYR B:453 , GLY B:454 , THR B:455
BINDING SITE FOR RESIDUE NAG A 504
05
AC5
SOFTWARE
NAG A:504 , BMA A:506 , MAN A:507 , ASN B:393 , ARG B:394 , HOH B:901
BINDING SITE FOR RESIDUE NAG A 505
06
AC6
SOFTWARE
NAG A:505 , MAN A:507 , MAN A:508 , GLN B:391 , ILE B:392 , ARG B:394
BINDING SITE FOR RESIDUE BMA A 506
07
AC7
SOFTWARE
NAG A:505 , BMA A:506 , HOH A:952 , ASP B:330
BINDING SITE FOR RESIDUE MAN A 507
08
AC8
SOFTWARE
BMA A:506 , HOH A:970
BINDING SITE FOR RESIDUE MAN A 508
09
AC9
SOFTWARE
ASN A:329 , SER A:331 , SER A:332
BINDING SITE FOR RESIDUE NAG A 509
10
BC1
SOFTWARE
ASN A:146 , ASN A:147
BINDING SITE FOR RESIDUE NAG A 510
11
BC2
SOFTWARE
ASN A:234
BINDING SITE FOR RESIDUE NAG A 511
12
BC3
SOFTWARE
ASN A:367
BINDING SITE FOR RESIDUE NAG A 512
13
BC4
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , HIS A:347
BINDING SITE FOR RESIDUE CA A 513
14
BC5
SOFTWARE
ARG B:118 , GLU B:119 , ARG B:152 , ARG B:224 , ALA B:246 , GLU B:276 , GLU B:277 , ARG B:292 , ASN B:294 , ARG B:371 , TYR B:406 , GAL B:503 , HOH B:916 , HOH B:990
BINDING SITE FOR RESIDUE SIA B 501
15
BC6
SOFTWARE
GAL B:503
BINDING SITE FOR RESIDUE NAG B 502
16
BC7
SOFTWARE
ARG B:118 , SIA B:501 , NAG B:502
BINDING SITE FOR RESIDUE GAL B 503
17
BC8
SOFTWARE
ASN B:200 , NAG B:505 , TYR C:453 , GLY C:454 , THR C:455 , HOH C:933
BINDING SITE FOR RESIDUE NAG B 504
18
BC9
SOFTWARE
NAG B:504 , BMA B:506 , ASN C:393 , ARG C:394 , HOH C:901
BINDING SITE FOR RESIDUE NAG B 505
19
CC1
SOFTWARE
NAG B:505 , MAN B:507 , GLN C:391 , ARG C:394
BINDING SITE FOR RESIDUE BMA B 506
20
CC2
SOFTWARE
BMA B:506 , HOH B:940 , HOH B:960 , HOH B:965 , GLN C:391
BINDING SITE FOR RESIDUE MAN B 507
21
CC3
SOFTWARE
ASN B:329 , SER B:331 , SER B:332
BINDING SITE FOR RESIDUE NAG B 508
22
CC4
SOFTWARE
ASN B:146 , ASN B:147
BINDING SITE FOR RESIDUE NAG B 509
23
CC5
SOFTWARE
ASN B:234
BINDING SITE FOR RESIDUE NAG B 510
24
CC6
SOFTWARE
ASN B:367 , GLU B:368 , SER B:370
BINDING SITE FOR RESIDUE NAG B 511
25
CC7
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , HIS B:347 , HOH B:906
BINDING SITE FOR RESIDUE CA B 512
26
CC8
SOFTWARE
ARG C:118 , GLU C:119 , ARG C:152 , ARG C:224 , ALA C:246 , GLU C:276 , GLU C:277 , ARG C:292 , ASN C:294 , ARG C:371 , TYR C:406 , GAL C:802 , HOH C:912
BINDING SITE FOR RESIDUE SIA C 801
27
CC9
SOFTWARE
SIA C:801 , HOH C:989
BINDING SITE FOR RESIDUE GAL C 802
28
DC1
SOFTWARE
ASN C:200 , NAG C:804 , TYR D:453 , GLY D:454 , THR D:455
BINDING SITE FOR RESIDUE NAG C 803
29
DC2
SOFTWARE
NAG C:803 , BMA C:805 , ASN D:393 , ARG D:394
BINDING SITE FOR RESIDUE NAG C 804
30
DC3
SOFTWARE
NAG C:804 , MAN C:806 , MAN C:807 , GLN D:391 , ARG D:394
BINDING SITE FOR RESIDUE BMA C 805
31
DC4
SOFTWARE
BMA C:805 , HOH C:971 , ASP D:330 , GLN D:391
BINDING SITE FOR RESIDUE MAN C 806
32
DC5
SOFTWARE
BMA C:805
BINDING SITE FOR RESIDUE MAN C 807
33
DC6
SOFTWARE
ASN C:146 , ASN C:147 , NAG C:809
BINDING SITE FOR RESIDUE NAG C 808
34
DC7
SOFTWARE
NAG C:808
BINDING SITE FOR RESIDUE NAG C 809
35
DC8
SOFTWARE
ASN C:86 , ASN C:234
BINDING SITE FOR RESIDUE NAG C 810
36
DC9
SOFTWARE
ASN C:367 , GLU C:368 , SER C:370 , ARG C:400
BINDING SITE FOR RESIDUE NAG C 811
37
EC1
SOFTWARE
ASP C:293 , GLY C:297 , ASP C:324 , GLY C:345 , HIS C:347 , HOH C:982
BINDING SITE FOR RESIDUE CA C 812
38
EC2
SOFTWARE
ARG D:118 , GLU D:119 , ARG D:152 , ARG D:224 , GLU D:276 , GLU D:277 , ARG D:292 , ARG D:371 , TYR D:406
BINDING SITE FOR RESIDUE SIA D 502
39
EC3
SOFTWARE
TYR A:453 , GLY A:454 , THR A:455 , HOH A:982 , ASN D:200 , NAG D:504
BINDING SITE FOR RESIDUE NAG D 503
40
EC4
SOFTWARE
ASN A:393 , ARG A:394 , NAG D:503 , BMA D:505
BINDING SITE FOR RESIDUE NAG D 504
41
EC5
SOFTWARE
GLN A:391 , ILE A:392 , ARG A:394 , NAG D:504 , MAN D:506 , MAN D:507
BINDING SITE FOR RESIDUE BMA D 505
42
EC6
SOFTWARE
ASP A:330 , GLN A:391 , ARG A:394 , BMA D:505
BINDING SITE FOR RESIDUE MAN D 506
43
EC7
SOFTWARE
BMA D:505
BINDING SITE FOR RESIDUE MAN D 507
44
EC8
SOFTWARE
ASN D:329 , SER D:331 , SER D:332
BINDING SITE FOR RESIDUE NAG D 508
45
EC9
SOFTWARE
ASN D:146 , ASN D:147 , LEU D:437 , NAG D:510 , FUC D:511
BINDING SITE FOR RESIDUE NAG D 509
46
FC1
SOFTWARE
NAG D:509
BINDING SITE FOR RESIDUE NAG D 510
47
FC2
SOFTWARE
ASN D:147 , NAG D:509
BINDING SITE FOR RESIDUE FUC D 511
48
FC3
SOFTWARE
ASN D:367 , GLU D:368 , ARG D:400
BINDING SITE FOR RESIDUE NAG D 512
49
FC4
SOFTWARE
ASP D:293 , GLY D:297 , ASP D:324 , GLY D:345 , HIS D:347 , HOH D:613
BINDING SITE FOR RESIDUE CA D 513
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4gzwa_ (A:)
1b: SCOP_d4gzwb_ (B:)
1c: SCOP_d4gzwc_ (C:)
1d: SCOP_d4gzwd_ (D:)
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Protein Domains
(
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(
)
Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
automated matches
(38)
Influenza a virus [TaxId: 119210]
(7)
1a
d4gzwa_
A:
1b
d4gzwb_
B:
1c
d4gzwc_
C:
1d
d4gzwd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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]
Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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