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4GZT
Asym. Unit
Info
Asym.Unit (277 KB)
Biol.Unit 1 (266 KB)
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(1)
Title
:
N2 NEURAMINIDASE D151G MUTANT OF A/TANZANIA/205/2010 H3N2 IN COMPLEX WITH OSELTAMIVIR CARBOXYLATE
Authors
:
X. Zhu, I. A. Wilson
Date
:
06 Sep 12 (Deposition) - 17 Oct 12 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta-Propella, Influenza Virus, Neuraminidase, Hemagglutinin, Hemadsorption, Viral Infection, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, R. Mcbride, C. M. Nycholat, W. Yu, J. C. Paulson, I. A. Wilson
Influenza Virus Neuraminidases With Reduced Enzymatic Activity That Avidly Bind Sialic Acid Receptors.
J. Virol. V. 86 13371 2012
[
close entry info
]
Hetero Components
(5, 45)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
4a: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39a)
4b: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39b)
4c: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39c)
4d: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39d)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
12
Ligand/Ion
BETA-D-MANNOSE
2
CA
5
Ligand/Ion
CALCIUM ION
3
FUC
3
Ligand/Ion
ALPHA-L-FUCOSE
4
G39
4
Ligand/Ion
(3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID
5
NAG
21
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(45, 45)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:118 , GLU A:119 , ARG A:152 , ARG A:224 , GLU A:276 , GLU A:277 , ARG A:292 , ARG A:371 , TYR A:406 , HOH A:694 , HOH A:743
BINDING SITE FOR RESIDUE G39 A 501
02
AC2
SOFTWARE
ASN A:200 , NAG A:503 , TYR D:453 , GLY D:454 , THR D:455
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
NAG A:502 , BMA A:504 , ASN D:393 , ARG D:394 , HOH D:605
BINDING SITE FOR RESIDUE NAG A 503
04
AC4
SOFTWARE
NAG A:503 , BMA A:505 , BMA A:506 , GLN D:391 , ILE D:392 , ASN D:393 , ARG D:394
BINDING SITE FOR RESIDUE BMA A 504
05
AC5
SOFTWARE
BMA A:504 , ASP D:330 , GLN D:391
BINDING SITE FOR RESIDUE BMA A 505
06
AC6
SOFTWARE
BMA A:504
BINDING SITE FOR RESIDUE BMA A 506
07
AC7
SOFTWARE
ASN A:146 , ASN A:147 , LEU A:437 , NAG A:508
BINDING SITE FOR RESIDUE NAG A 507
08
AC8
SOFTWARE
NAG A:507
BINDING SITE FOR RESIDUE NAG A 508
09
AC9
SOFTWARE
ASN A:234 , HOH A:706
BINDING SITE FOR RESIDUE NAG A 509
10
BC1
SOFTWARE
ASN A:367 , GLU A:368 , SER A:370 , ARG A:400
BINDING SITE FOR RESIDUE NAG A 510
11
BC2
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , HIS A:347 , HOH A:609
BINDING SITE FOR RESIDUE CA A 511
12
BC3
SOFTWARE
HOH A:652 , HOH B:658
BINDING SITE FOR RESIDUE CA A 512
13
BC4
SOFTWARE
ARG B:118 , GLU B:119 , ARG B:152 , GLU B:277 , ARG B:292 , ASN B:294 , ARG B:371 , TYR B:406 , HOH B:639 , HOH B:746
BINDING SITE FOR RESIDUE G39 B 501
14
BC5
SOFTWARE
TYR A:453 , GLY A:454 , THR A:455 , ASN B:200 , NAG B:503 , HOH B:630
BINDING SITE FOR RESIDUE NAG B 502
15
BC6
SOFTWARE
ASN A:393 , ARG A:394 , HOH A:613 , NAG B:502 , BMA B:504 , BMA B:505 , HOH B:651 , HOH B:673
BINDING SITE FOR RESIDUE NAG B 503
16
BC7
SOFTWARE
GLN A:391 , ILE A:392 , ASN A:393 , ARG A:394 , NAG B:503 , BMA B:505 , BMA B:506 , HOH B:647
BINDING SITE FOR RESIDUE BMA B 504
17
BC8
SOFTWARE
ASP A:330 , GLN A:391 , HOH A:645 , NAG B:503 , BMA B:504 , HOH B:701 , HOH B:711
BINDING SITE FOR RESIDUE BMA B 505
18
BC9
SOFTWARE
BMA B:504 , HOH B:715
BINDING SITE FOR RESIDUE BMA B 506
19
CC1
SOFTWARE
ASN B:329 , SER B:331 , SER B:332
BINDING SITE FOR RESIDUE NAG B 507
20
CC2
SOFTWARE
ASN B:146 , ASN B:147 , LEU B:437
BINDING SITE FOR RESIDUE NAG B 508
21
CC3
SOFTWARE
ASN B:367 , GLU B:368 , SER B:370 , HOH B:697
BINDING SITE FOR RESIDUE NAG B 509
22
CC4
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , HIS B:347 , HOH B:727
BINDING SITE FOR RESIDUE CA B 510
23
CC5
SOFTWARE
ARG C:118 , GLU C:119 , ARG C:152 , GLU C:276 , GLU C:277 , ARG C:292 , ASN C:294 , ARG C:371 , TYR C:406 , HOH C:753 , HOH C:754
BINDING SITE FOR RESIDUE G39 C 501
24
CC6
SOFTWARE
TYR B:453 , GLY B:454 , THR B:455 , HOH B:634 , ASN C:200 , NAG C:503
BINDING SITE FOR RESIDUE NAG C 502
25
CC7
SOFTWARE
ASN B:393 , ARG B:394 , NAG C:502 , BMA C:504 , BMA C:505 , HOH C:627 , HOH C:686 , HOH C:735
BINDING SITE FOR RESIDUE NAG C 503
26
CC8
SOFTWARE
GLN B:391 , ILE B:392 , ARG B:394 , NAG C:503 , BMA C:505 , BMA C:506
BINDING SITE FOR RESIDUE BMA C 504
27
CC9
SOFTWARE
ASP B:330 , ARG B:394 , NAG C:503 , BMA C:504 , HOH C:616 , HOH C:681 , HOH C:748
BINDING SITE FOR RESIDUE BMA C 505
28
DC1
SOFTWARE
BMA C:504 , HOH C:719
BINDING SITE FOR RESIDUE BMA C 506
29
DC2
SOFTWARE
ASN C:146 , ASN C:147 , FUC C:508
BINDING SITE FOR RESIDUE NAG C 507
30
DC3
SOFTWARE
ASN C:147 , NAG C:507
BINDING SITE FOR RESIDUE FUC C 508
31
DC4
SOFTWARE
ASN C:367 , LEU C:372 , HOH C:689 , HOH C:728
BINDING SITE FOR RESIDUE NAG C 509
32
DC5
SOFTWARE
ASP C:293 , GLY C:297 , ASP C:324 , GLY C:345 , HIS C:347 , HOH C:747
BINDING SITE FOR RESIDUE CA C 510
33
DC6
SOFTWARE
ARG D:118 , GLU D:119 , ARG D:152 , ARG D:224 , GLU D:277 , ARG D:292 , ASN D:294 , HIS D:347 , ARG D:371 , TYR D:406
BINDING SITE FOR RESIDUE G39 D 501
34
DC7
SOFTWARE
TYR C:453 , GLY C:454 , THR C:455 , HOH C:700 , ASN D:200 , NAG D:503
BINDING SITE FOR RESIDUE NAG D 502
35
DC8
SOFTWARE
ASN C:393 , ARG C:394 , NAG D:502 , BMA D:504 , HOH D:731
BINDING SITE FOR RESIDUE NAG D 503
36
DC9
SOFTWARE
GLN C:391 , ILE C:392 , ARG C:394 , NAG D:503 , BMA D:505 , BMA D:506
BINDING SITE FOR RESIDUE BMA D 504
37
EC1
SOFTWARE
ASP C:330 , GLN C:391 , BMA D:504 , HOH D:649 , HOH D:659
BINDING SITE FOR RESIDUE BMA D 505
38
EC2
SOFTWARE
BMA D:504 , HOH D:614
BINDING SITE FOR RESIDUE BMA D 506
39
EC3
SOFTWARE
ASN D:329 , SER D:331 , SER D:332 , HOH D:735
BINDING SITE FOR RESIDUE NAG D 507
40
EC4
SOFTWARE
ASN D:146 , ASN D:147 , LEU D:437 , NAG D:509 , FUC D:510 , FUC D:511
BINDING SITE FOR RESIDUE NAG D 508
41
EC5
SOFTWARE
NAG D:508 , FUC D:510 , FUC D:511 , HOH D:672
BINDING SITE FOR RESIDUE NAG D 509
42
EC6
SOFTWARE
ASN D:147 , ARG D:150 , NAG D:508 , NAG D:509
BINDING SITE FOR RESIDUE FUC D 510
43
EC7
SOFTWARE
NAG D:508 , NAG D:509
BINDING SITE FOR RESIDUE FUC D 511
44
EC8
SOFTWARE
ASN D:367 , GLU D:368 , ARG D:400
BINDING SITE FOR RESIDUE NAG D 512
45
EC9
SOFTWARE
ASP D:293 , GLY D:297 , ASP D:324 , GLY D:345 , HIS D:347 , HOH D:608
BINDING SITE FOR RESIDUE CA D 513
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4gzta_ (A:)
1b: SCOP_d4gztb_ (B:)
1c: SCOP_d4gztc_ (C:)
1d: SCOP_d4gztd_ (D:)
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(
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
automated matches
(38)
Influenza a virus [TaxId: 119210]
(7)
1a
d4gzta_
A:
1b
d4gztb_
B:
1c
d4gztc_
C:
1d
d4gztd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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