PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4GZS
Asym. Unit
Info
Asym.Unit (270 KB)
Biol.Unit 1 (259 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
N2 NEURAMINIDASE D151G MUTANT OF A/TANZANIA/205/2010 H3N2 IN COMPLEX WITH HEPES
Authors
:
X. Zhu, I. A. Wilson
Date
:
06 Sep 12 (Deposition) - 17 Oct 12 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta-Propella, Influenza Virus, Neuraminidase, Hemagglutinin, Hemadsorption, Viral Infection, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, R. Mcbride, C. M. Nycholat, W. Yu, J. C. Paulson, I. A. Wilson
Influenza Virus Neuraminidases With Reduced Enzymatic Activity That Avidly Bind Sialic Acid Receptors.
J. Virol. V. 86 13371 2012
[
close entry info
]
Hetero Components
(6, 44)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
3d: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEd)
4a: ALPHA-L-FUCOSE (FUCa)
4b: ALPHA-L-FUCOSE (FUCb)
4c: ALPHA-L-FUCOSE (FUCc)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
5g: ALPHA-D-MANNOSE (MANg)
5h: ALPHA-D-MANNOSE (MANh)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6q: N-ACETYL-D-GLUCOSAMINE (NAGq)
6r: N-ACETYL-D-GLUCOSAMINE (NAGr)
6s: N-ACETYL-D-GLUCOSAMINE (NAGs)
6t: N-ACETYL-D-GLUCOSAMINE (NAGt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
5
Ligand/Ion
CALCIUM ION
3
EPE
4
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
FUC
3
Ligand/Ion
ALPHA-L-FUCOSE
5
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
20
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(43, 43)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , GLY A:346 , HIS A:347
BINDING SITE FOR RESIDUE CA A 501
02
AC2
SOFTWARE
ARG A:118 , GLU A:119 , ARG A:152 , TRP A:178 , ILE A:222 , GLU A:277 , ARG A:292 , HIS A:347 , ARG A:371 , TYR A:406
BINDING SITE FOR RESIDUE EPE A 502
03
AC3
SOFTWARE
ASN A:200 , NAG A:504 , TYR D:453 , GLY D:454 , THR D:455 , HOH D:646
BINDING SITE FOR RESIDUE NAG A 503
04
AC4
SOFTWARE
NAG A:503 , BMA A:505 , ASN D:393 , ARG D:394
BINDING SITE FOR RESIDUE NAG A 504
05
AC5
SOFTWARE
NAG A:504 , MAN A:506 , MAN A:507 , GLN D:391 , ILE D:392 , ARG D:394
BINDING SITE FOR RESIDUE BMA A 505
06
AC6
SOFTWARE
BMA A:505 , ASP D:330 , GLN D:391 , ARG D:394
BINDING SITE FOR RESIDUE MAN A 506
07
AC7
SOFTWARE
BMA A:505
BINDING SITE FOR RESIDUE MAN A 507
08
AC8
SOFTWARE
ASN A:146 , ASN A:147 , FUC A:509
BINDING SITE FOR RESIDUE NAG A 508
09
AC9
SOFTWARE
ASN A:147 , ARG A:150 , NAG A:508
BINDING SITE FOR RESIDUE FUC A 509
10
BC1
SOFTWARE
ASN A:367 , GLU A:368 , SER A:370 , ARG A:400
BINDING SITE FOR RESIDUE NAG A 510
11
BC2
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , GLY B:346 , HIS B:347
BINDING SITE FOR RESIDUE CA B 501
12
BC3
SOFTWARE
ARG B:118 , GLY B:151 , ARG B:152 , TRP B:178 , ILE B:222 , ARG B:292 , HIS B:347 , ARG B:371 , TYR B:406
BINDING SITE FOR RESIDUE EPE B 502
13
BC4
SOFTWARE
TYR A:453 , GLY A:454 , ASN B:200 , NAG B:504 , HOH B:610 , HOH B:667
BINDING SITE FOR RESIDUE NAG B 503
14
BC5
SOFTWARE
ASN A:393 , ARG A:394 , NAG B:503 , BMA B:505
BINDING SITE FOR RESIDUE NAG B 504
15
BC6
SOFTWARE
GLN A:391 , ARG A:394 , NAG B:504 , MAN B:506 , MAN B:507 , HOH B:647
BINDING SITE FOR RESIDUE BMA B 505
16
BC7
SOFTWARE
ASP A:330 , GLN A:391 , BMA B:505 , HOH B:669
BINDING SITE FOR RESIDUE MAN B 506
17
BC8
SOFTWARE
BMA B:505 , HOH B:629 , HOH B:652
BINDING SITE FOR RESIDUE MAN B 507
18
BC9
SOFTWARE
ASN B:329 , SER B:331 , SER B:332
BINDING SITE FOR RESIDUE NAG B 508
19
CC1
SOFTWARE
ASN B:146 , ASN B:147 , FUC B:510 , HOH B:644
BINDING SITE FOR RESIDUE NAG B 509
20
CC2
SOFTWARE
ASN B:147 , NAG B:509
BINDING SITE FOR RESIDUE FUC B 510
21
CC3
SOFTWARE
ASN B:367 , GLU B:368 , SER B:370
BINDING SITE FOR RESIDUE NAG B 511
22
CC4
SOFTWARE
ASP C:293 , GLY C:297 , ASP C:324 , GLY C:345 , HIS C:347 , HOH C:601
BINDING SITE FOR RESIDUE CA C 502
23
CC5
SOFTWARE
ARG C:118 , GLY C:151 , ARG C:152 , TRP C:178 , ILE C:222 , ARG C:292 , ARG C:371 , TYR C:406
BINDING SITE FOR RESIDUE EPE C 503
24
CC6
SOFTWARE
TYR B:453 , GLY B:454 , THR B:455 , ASN C:200 , NAG C:505
BINDING SITE FOR RESIDUE NAG C 504
25
CC7
SOFTWARE
ASN B:393 , ARG B:394 , HOH B:605 , NAG C:504 , BMA C:506 , MAN C:507 , HOH C:620 , HOH C:644
BINDING SITE FOR RESIDUE NAG C 505
26
CC8
SOFTWARE
GLN B:391 , ILE B:392 , ASN B:393 , ARG B:394 , NAG C:505 , MAN C:507 , MAN C:508
BINDING SITE FOR RESIDUE BMA C 506
27
CC9
SOFTWARE
ASP B:330 , NAG C:505 , BMA C:506
BINDING SITE FOR RESIDUE MAN C 507
28
DC1
SOFTWARE
BMA C:506 , HOH C:603
BINDING SITE FOR RESIDUE MAN C 508
29
DC2
SOFTWARE
ASN C:329 , SER C:331 , SER C:332
BINDING SITE FOR RESIDUE NAG C 509
30
DC3
SOFTWARE
ASN C:146 , ASN C:147 , FUC C:511
BINDING SITE FOR RESIDUE NAG C 510
31
DC4
SOFTWARE
ASN C:147 , ARG C:150 , NAG C:510
BINDING SITE FOR RESIDUE FUC C 511
32
DC5
SOFTWARE
ASN C:367 , HOH C:604
BINDING SITE FOR RESIDUE NAG C 512
33
DC6
SOFTWARE
ASP D:293 , GLY D:297 , ASP D:324 , GLY D:345 , HIS D:347 , HOH D:608
BINDING SITE FOR RESIDUE CA D 501
34
DC7
SOFTWARE
ARG D:118 , ARG D:152 , TRP D:178 , ARG D:292 , ARG D:371 , TYR D:406
BINDING SITE FOR RESIDUE EPE D 502
35
DC8
SOFTWARE
TYR C:453 , GLY C:454 , THR C:455 , ASN D:200 , NAG D:504 , HOH D:614
BINDING SITE FOR RESIDUE NAG D 503
36
DC9
SOFTWARE
ASN C:393 , ARG C:394 , NAG D:503 , BMA D:505 , HOH D:669
BINDING SITE FOR RESIDUE NAG D 504
37
EC1
SOFTWARE
GLN C:391 , ARG C:394 , NAG D:504 , MAN D:506 , MAN D:507
BINDING SITE FOR RESIDUE BMA D 505
38
EC2
SOFTWARE
GLN C:391 , ARG C:394 , BMA D:505
BINDING SITE FOR RESIDUE MAN D 506
39
EC3
SOFTWARE
BMA D:505 , HOH D:625 , HOH D:658
BINDING SITE FOR RESIDUE MAN D 507
40
EC4
SOFTWARE
ASN D:329 , SER D:331 , SER D:332 , HOH D:644
BINDING SITE FOR RESIDUE NAG D 508
41
EC5
SOFTWARE
ASN D:146 , ASN D:147 , NAG D:510
BINDING SITE FOR RESIDUE NAG D 509
42
EC6
SOFTWARE
NAG D:509
BINDING SITE FOR RESIDUE NAG D 510
43
EC7
SOFTWARE
ASN D:367 , GLU D:368 , ARG D:400
BINDING SITE FOR RESIDUE NAG D 511
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4gzsa_ (A:)
1b: SCOP_d4gzsb_ (B:)
1c: SCOP_d4gzsc_ (C:)
1d: SCOP_d4gzsd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
automated matches
(38)
Influenza a virus [TaxId: 119210]
(7)
1a
d4gzsa_
A:
1b
d4gzsb_
B:
1c
d4gzsc_
C:
1d
d4gzsd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (270 KB)
Header - Asym.Unit
Biol.Unit 1 (259 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4GZS
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help