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4GXX
Asym. Unit
Info
Asym.Unit (532 KB)
Biol.Unit 1 (519 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE "AVIANIZED" 1918 INFLUENZA VIRUS HEMAGGLUTININ
Authors
:
D. C. Ekiert, I. A. Wilson
Date
:
04 Sep 12 (Deposition) - 19 Dec 12 (Release) - 26 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Fusion Protein, Virus Attachment And Entry, Viral Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
T. Tsibane, D. C. Ekiert, J. C. Krause, O. Martinez, J. E. Crowe, I. A. Wilson, C. F. Basler
Influenza Human Monoclonal Antibody 1F1 Interacts With Thre Major Antigenic Sites And Residues Mediating Human Receptor Specificity In H1N1 Viruses.
Plos Pathog. V. 8 03067 2012
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:21
BINDING SITE FOR RESIDUE NAG A 401
2
AC2
SOFTWARE
ASN C:21
BINDING SITE FOR RESIDUE NAG C 401
3
AC3
SOFTWARE
ASN C:278 , ASN C:289
BINDING SITE FOR RESIDUE NAG C 407
4
AC4
SOFTWARE
ASN E:21
BINDING SITE FOR RESIDUE NAG E 401
5
AC5
SOFTWARE
ALA F:147 , GLU F:150 , ASN F:154 , THR F:156
BINDING SITE FOR RESIDUE NAG F 201
6
AC6
SOFTWARE
ASN A:73 , GLU A:94 , ASN A:95 , CYS A:97 , LYS A:222 , VAL A:223 , ARG A:224 , HOH A:528 , HOH A:611 , HOH A:677 , HOH A:686 , HOH A:698
BINDING SITE FOR LINKED RESIDUES A 402 to 405
7
AC7
SOFTWARE
ASN C:73 , GLU C:75 , GLU C:94 , ASN C:95 , CYS C:97 , LYS C:222 , ARG C:224 , HOH C:540 , HOH C:618 , HOH C:635 , HOH C:636 , HOH C:689
BINDING SITE FOR LINKED RESIDUES C 402 to 406
8
AC8
SOFTWARE
ASN E:73 , GLU E:94 , ASN E:95 , CYS E:97 , ARG E:224 , HOH E:528 , HOH E:728
BINDING SITE FOR LINKED RESIDUES E 402 to 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d4gxxa_ (A:)
1b: SCOP_d4gxxc_ (C:)
1c: SCOP_d4gxxe_ (E:)
2a: SCOP_d4gxxb_ (B:)
2b: SCOP_d4gxxd_ (D:)
2c: SCOP_d4gxxf_ (F:)
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Classes
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Protein Domains
(
)
(
)
Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza a virus (a/brevig mission/1/1918(h1n1)) [TaxId: 88776]
(3)
1a
d4gxxa_
A:
1b
d4gxxc_
C:
1c
d4gxxe_
E:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d4gxxb_
B:
2b
d4gxxd_
D:
2c
d4gxxf_
F:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (532 KB)
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