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4GVZ
Asym. Unit
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Asym.Unit (121 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARGININE KINASE IN COMPLEX WITH D-ARGININE, MGADP, AND NITRATE.
Authors
:
S. A. Clark, O. Davulcu, M. S. Chapman
Date
:
31 Aug 12 (Deposition) - 03 Oct 12 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.96
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Arginine Kinase, Phosphagen Kinase, Transferase, Transition State Analog, Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. A. Clark, O. Davulcu, M. S. Chapman
Crystal Structures Of Arginine Kinase In Complex With Adp, Nitrate, And Various Phosphagen Analogs.
Biochem. Biophys. Res. Commun. V. 427 212 2012
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: D-ARGININE (DARa)
3a: MAGNESIUM ION (MGa)
4a: NITRATE ION (NO3a)
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No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
DAR
1
Ligand/Ion
D-ARGININE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
NO3
1
Ligand/Ion
NITRATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:122 , ARG A:124 , ARG A:126 , HIS A:185 , TRP A:221 , ARG A:229 , ARG A:280 , SER A:282 , VAL A:283 , HIS A:284 , ARG A:309 , THR A:311 , ARG A:312 , GLY A:313 , GLU A:314 , ASP A:324 , MG A:402 , NO3 A:403 , HOH A:566 , HOH A:567
BINDING SITE FOR RESIDUE ADP A 401
2
AC2
SOFTWARE
ADP A:401 , NO3 A:403 , HOH A:566 , HOH A:567 , HOH A:573
BINDING SITE FOR RESIDUE MG A 402
3
AC3
SOFTWARE
ARG A:126 , ARG A:229 , ASN A:274 , ARG A:309 , GLU A:314 , ADP A:401 , MG A:402 , DAR A:404 , HOH A:566 , HOH A:567
BINDING SITE FOR RESIDUE NO3 A 403
4
AC4
SOFTWARE
SER A:63 , GLY A:64 , VAL A:65 , GLY A:66 , TYR A:68 , PHE A:194 , GLU A:225 , CYS A:271 , THR A:273 , ASN A:274 , GLU A:314 , HIS A:315 , NO3 A:403 , HOH A:580
BINDING SITE FOR RESIDUE DAR A 404
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4gvza1 (A:2-95)
2a: SCOP_d4gvza2 (A:96-357)
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Class
:
All alpha proteins
(14657)
Fold
:
Guanido kinase N-terminal domain
(35)
Superfamily
:
Guanido kinase N-terminal domain
(35)
Family
:
Guanido kinase N-terminal domain
(21)
Protein domain
:
Arginine kinase, N-domain
(13)
Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
(11)
1a
d4gvza1
A:2-95
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Guanido kinase catalytic domain
(29)
Protein domain
:
Arginine kinase, C-terminal domain
(13)
Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
(11)
2a
d4gvza2
A:96-357
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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