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4GUT
Asym. Unit
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Asym.Unit (137 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LSD2-NPAC
Authors
:
F. Chen, Z. Dong, J. Fang, Y. Yang, Z. Li, Y. Xu, H. Yang, P. Wang, R. Fang, Y
Date
:
29 Aug 12 (Deposition) - 16 Jan 13 (Release) - 10 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Histone Demethylase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Fang, F. Chen, Z. Dong, D. Hu, A. J. Barbera, E. A. Clark, J. Fang, Y. Yang, P. Mei, M. Rutenberg, Z. Li, Y. Zhang, Y. Xu, H. Yang, P. Wang, M. D. Simon, Q. Zhou, J. Li, M. P. Marynick, X. Li, H. Lu, U. B. Kaiser, R. E. Kingston, Y. Xu, Y. G. Shi
Lsd2/Kdm1B And Its Cofactor Npac/Glyr1 Endow A Structural And Molecular Model For Regulation Of H3K4 Demethylation
Mol. Cell V. 49 558 2013
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: TRIETHYLENE GLYCOL (PGEa)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
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No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
GOL
2
Ligand/Ion
GLYCEROL
3
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
4
ZN
3
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:388 , GLY A:389 , GLY A:391 , PRO A:392 , ALA A:393 , LEU A:411 , GLU A:412 , ALA A:413 , LYS A:414 , GLY A:419 , ARG A:420 , ARG A:434 , GLY A:435 , ALA A:436 , GLN A:437 , ILE A:438 , VAL A:598 , VAL A:627 , PRO A:628 , ILE A:637 , TRP A:757 , TRP A:762 , ALA A:766 , GLY A:794 , GLU A:795 , GLN A:803 , THR A:804 , VAL A:805 , ALA A:808 , GOL A:902 , HOH A:1103 , HOH A:1106 , HOH A:1116 , HOH A:1126 , HOH A:1266 , HOH A:1434
BINDING SITE FOR RESIDUE FAD A 901
2
AC2
SOFTWARE
ALA A:546 , TYR A:767 , GLN A:803 , THR A:804 , FAD A:901 , HOH A:1266
BINDING SITE FOR RESIDUE GOL A 902
3
AC3
SOFTWARE
TRP A:422 , ARG A:434 , THR A:755 , ARG A:756 , TRP A:757
BINDING SITE FOR RESIDUE GOL A 903
4
AC4
SOFTWARE
CYS A:53 , CYS A:58 , HIS A:84 , HIS A:90
BINDING SITE FOR RESIDUE ZN A 904
5
AC5
SOFTWARE
CYS A:65 , CYS A:73 , CYS A:92 , CYS A:95
BINDING SITE FOR RESIDUE ZN A 905
6
AC6
SOFTWARE
CYS A:142 , CYS A:147 , CYS A:169 , CYS A:185
BINDING SITE FOR RESIDUE ZN A 906
7
AC7
SOFTWARE
TYR A:223 , TYR A:273 , GLN A:274 , ASN A:276 , GLU A:277 , ARG A:285 , ASP A:287 , PHE B:217 , HIS B:218
BINDING SITE FOR RESIDUE PGE B 301
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (137 KB)
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