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4GQC
Biol. Unit 2
Info
Asym.Unit (244 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (120 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AEROPYRUM PERNIX PEROXIREDOXIN Q ENZYME IN FULLY-FOLDED AND LOCALLY-UNFOLDED CONFORMATIONS
Authors
:
A. Perkins, P. A. Karplus, M. C. Gretes, K. J. Nelson, L. B. Poole
Date
:
22 Aug 12 (Deposition) - 24 Oct 12 (Release) - 20 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Cxxxxc Motif, Fully Folded, Locally Unfolded, Peroxide, Dtt, Structural Genomics, Riken, Peroxiredoxin, Reduces Peroxides, Disulfide, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Perkins, M. C. Gretes, K. J. Nelson, L. B. Poole, P. A. Karplus
Mapping The Active Site Helix-To-Strand Conversion Of Cxxxx Peroxiredoxin Q Enzymes.
Biochemistry V. 51 7638 2012
[
close entry info
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: DITHIANE DIOL (DTDa)
1b: DITHIANE DIOL (DTDb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTD
1
Ligand/Ion
DITHIANE DIOL
2
GOL
2
Ligand/Ion
GLYCEROL
3
SO4
15
Ligand/Ion
SULFATE ION
[
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Sites
(24, 24)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC6 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC2 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC8 (SOFTWARE)
16: CC9 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC3 (SOFTWARE)
19: DC4 (SOFTWARE)
20: DC5 (SOFTWARE)
21: DC6 (SOFTWARE)
22: DC7 (SOFTWARE)
23: DC8 (SOFTWARE)
24: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
THR A:50 , LYS A:51 , HOH D:356
BINDING SITE FOR RESIDUE SO4 A 204
02
AC6
SOFTWARE
ARG A:57 , LYS D:157
BINDING SITE FOR RESIDUE SO4 A 206
03
BC1
SOFTWARE
THR A:50 , LYS A:51 , GLU A:52 , CYS A:54 , LYS D:136 , VAL D:138 , SO4 D:204
BINDING SITE FOR RESIDUE SO4 A 210
04
BC2
SOFTWARE
GLU B:22 , PRO B:23 , VAL B:24 , ASN B:25 , GLU B:28 , VAL B:29 , ARG B:32
BINDING SITE FOR RESIDUE GOL B 201
05
BC3
SOFTWARE
VAL B:75 , TYR B:98 , ARG B:100 , HOH B:1011 , VAL D:75 , TYR D:98 , ARG D:100
BINDING SITE FOR RESIDUE GOL B 202
06
BC4
SOFTWARE
TRP B:137 , ASN B:144 , SO4 B:205 , HOH B:1029
BINDING SITE FOR RESIDUE SO4 B 203
07
BC5
SOFTWARE
HIS B:110 , GLU B:111 , ASP B:112
BINDING SITE FOR RESIDUE SO4 B 204
08
BC6
SOFTWARE
THR B:139 , ASP B:140 , ASN B:141 , SO4 B:203
BINDING SITE FOR RESIDUE SO4 B 205
09
BC7
SOFTWARE
THR B:50 , LYS B:51 , HOH B:1087
BINDING SITE FOR RESIDUE SO4 B 206
10
BC8
SOFTWARE
ARG B:34
BINDING SITE FOR RESIDUE SO4 B 207
11
BC9
SOFTWARE
PRO B:47 , LYS B:114 , LEU B:143 , SO4 B:210 , HOH B:1062 , GLU C:6 , HOH C:361 , TRP D:79
BINDING SITE FOR RESIDUE SO4 B 208
12
CC1
SOFTWARE
ASP B:13 , PHE B:14 , THR B:15 , ASN B:25 , HOH B:1002 , HOH B:1059
BINDING SITE FOR RESIDUE SO4 B 209
13
CC2
SOFTWARE
LYS B:114 , SO4 B:208 , GLU C:6 , LEU C:7 , GLU C:9 , ASP D:20 , PHE D:21
BINDING SITE FOR RESIDUE SO4 B 210
14
CC6
SOFTWARE
GLU B:52 , ASN C:141 , ASN C:144 , HOH C:325
BINDING SITE FOR RESIDUE SO4 C 204
15
CC8
SOFTWARE
THR B:50 , LYS B:51 , GLU B:52 , CYS B:54 , LYS C:136 , VAL C:138 , HOH C:313
BINDING SITE FOR RESIDUE SO4 C 206
16
CC9
SOFTWARE
LYS B:31 , ASN C:144 , GLU C:145
BINDING SITE FOR RESIDUE SO4 C 207
17
DC2
SOFTWARE
TRP B:79 , SER D:46 , PRO D:47 , VAL D:48 , CYS D:49 , LEU D:113 , ARG D:122 , HOH D:327
BINDING SITE FOR RESIDUE DTD D 201
18
DC3
SOFTWARE
HIS D:110 , GLU D:111 , ASP D:112 , HOH D:341
BINDING SITE FOR RESIDUE SO4 D 202
19
DC4
SOFTWARE
LYS A:31 , ASN D:144 , GLU D:145
BINDING SITE FOR RESIDUE SO4 D 203
20
DC5
SOFTWARE
SO4 A:210 , LEU D:4 , ASN D:107 , LYS D:136
BINDING SITE FOR RESIDUE SO4 D 204
21
DC6
SOFTWARE
ARG D:57 , GLN D:62 , ARG D:89 , HOH D:343
BINDING SITE FOR RESIDUE SO4 D 205
22
DC7
SOFTWARE
ARG C:32 , ARG D:32
BINDING SITE FOR RESIDUE SO4 D 206
23
DC8
SOFTWARE
ARG D:100 , LYS D:104 , MET D:118 , HOH D:361
BINDING SITE FOR RESIDUE SO4 D 207
24
DC9
SOFTWARE
LYS A:31 , ARG A:32 , LYS D:51
BINDING SITE FOR RESIDUE SO4 D 208
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4gqca_ (A:)
1b: SCOP_d4gqcb_ (B:)
1c: SCOP_d4gqcc_ (C:)
1d: SCOP_d4gqcd_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Bacterioferritin comigratory protein
(4)
Aeropyrum pernix [TaxId: 56636]
(4)
1a
d4gqca_
A:
1b
d4gqcb_
B:
1c
d4gqcc_
C:
1d
d4gqcd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
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Chain B
Chain D
Asymmetric Unit 1
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Asym.Unit (244 KB)
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