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4GQC
Asym. Unit
Info
Asym.Unit (244 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (120 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AEROPYRUM PERNIX PEROXIREDOXIN Q ENZYME IN FULLY-FOLDED AND LOCALLY-UNFOLDED CONFORMATIONS
Authors
:
A. Perkins, P. A. Karplus, M. C. Gretes, K. J. Nelson, L. B. Poole
Date
:
22 Aug 12 (Deposition) - 24 Oct 12 (Release) - 20 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Cxxxxc Motif, Fully Folded, Locally Unfolded, Peroxide, Dtt, Structural Genomics, Riken, Peroxiredoxin, Reduces Peroxides, Disulfide, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Perkins, M. C. Gretes, K. J. Nelson, L. B. Poole, P. A. Karplus
Mapping The Active Site Helix-To-Strand Conversion Of Cxxxx Peroxiredoxin Q Enzymes.
Biochemistry V. 51 7638 2012
[
close entry info
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Hetero Components
(3, 36)
Info
All Hetero Components
1a: DITHIANE DIOL (DTDa)
1b: DITHIANE DIOL (DTDb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTD
2
Ligand/Ion
DITHIANE DIOL
2
GOL
3
Ligand/Ion
GLYCEROL
3
SO4
31
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:137 , ASN A:144 , SO4 A:207
BINDING SITE FOR RESIDUE SO4 A 201
02
AC2
SOFTWARE
ARG A:32 , GLU A:69 , ASN A:93 , HOH A:324
BINDING SITE FOR RESIDUE SO4 A 202
03
AC3
SOFTWARE
HIS A:110 , GLU A:111 , ASP A:112
BINDING SITE FOR RESIDUE SO4 A 203
04
AC4
SOFTWARE
THR A:50 , LYS A:51 , HOH D:356
BINDING SITE FOR RESIDUE SO4 A 204
05
AC5
SOFTWARE
ARG A:34 , ALA A:68
BINDING SITE FOR RESIDUE SO4 A 205
06
AC6
SOFTWARE
ARG A:57 , LYS D:157
BINDING SITE FOR RESIDUE SO4 A 206
07
AC7
SOFTWARE
VAL A:138 , THR A:139 , ASP A:140 , SO4 A:201
BINDING SITE FOR RESIDUE SO4 A 207
08
AC8
SOFTWARE
VAL A:24 , ASN A:25 , GLU A:28 , VAL A:29 , ARG A:32 , HOH A:325
BINDING SITE FOR RESIDUE SO4 A 208
09
AC9
SOFTWARE
PHE A:14 , THR A:15 , GLU A:101
BINDING SITE FOR RESIDUE SO4 A 209
10
BC1
SOFTWARE
THR A:50 , LYS A:51 , GLU A:52 , CYS A:54 , LYS D:136 , VAL D:138 , SO4 D:204
BINDING SITE FOR RESIDUE SO4 A 210
11
BC2
SOFTWARE
GLU B:22 , PRO B:23 , VAL B:24 , ASN B:25 , GLU B:28 , VAL B:29 , ARG B:32
BINDING SITE FOR RESIDUE GOL B 201
12
BC3
SOFTWARE
VAL B:75 , TYR B:98 , ARG B:100 , HOH B:1011 , VAL D:75 , TYR D:98 , ARG D:100
BINDING SITE FOR RESIDUE GOL B 202
13
BC4
SOFTWARE
TRP B:137 , ASN B:144 , SO4 B:205 , HOH B:1029
BINDING SITE FOR RESIDUE SO4 B 203
14
BC5
SOFTWARE
HIS B:110 , GLU B:111 , ASP B:112
BINDING SITE FOR RESIDUE SO4 B 204
15
BC6
SOFTWARE
THR B:139 , ASP B:140 , ASN B:141 , SO4 B:203
BINDING SITE FOR RESIDUE SO4 B 205
16
BC7
SOFTWARE
THR B:50 , LYS B:51 , HOH B:1087
BINDING SITE FOR RESIDUE SO4 B 206
17
BC8
SOFTWARE
ARG B:34
BINDING SITE FOR RESIDUE SO4 B 207
18
BC9
SOFTWARE
PRO B:47 , LYS B:114 , LEU B:143 , SO4 B:210 , HOH B:1062 , GLU C:6 , HOH C:361 , TRP D:79
BINDING SITE FOR RESIDUE SO4 B 208
19
CC1
SOFTWARE
ASP B:13 , PHE B:14 , THR B:15 , ASN B:25 , HOH B:1002 , HOH B:1059
BINDING SITE FOR RESIDUE SO4 B 209
20
CC2
SOFTWARE
LYS B:114 , SO4 B:208 , GLU C:6 , LEU C:7 , GLU C:9 , ASP D:20 , PHE D:21
BINDING SITE FOR RESIDUE SO4 B 210
21
CC3
SOFTWARE
VAL A:75 , TYR A:98 , ARG A:100 , HOH A:310 , VAL C:75 , TYR C:98 , ARG C:100 , HOH C:320
BINDING SITE FOR RESIDUE GOL C 201
22
CC4
SOFTWARE
TRP A:79 , SER C:46 , PRO C:47 , VAL C:48 , CYS C:49 , LEU C:113 , ARG C:122 , PRO C:142 , HOH C:369
BINDING SITE FOR RESIDUE DTD C 202
23
CC5
SOFTWARE
HIS C:110 , GLU C:111 , ASP C:112 , HOH C:347
BINDING SITE FOR RESIDUE SO4 C 203
24
CC6
SOFTWARE
GLU B:52 , ASN C:141 , ASN C:144 , HOH C:325
BINDING SITE FOR RESIDUE SO4 C 204
25
CC7
SOFTWARE
LYS C:104 , MET C:118
BINDING SITE FOR RESIDUE SO4 C 205
26
CC8
SOFTWARE
THR B:50 , LYS B:51 , GLU B:52 , CYS B:54 , LYS C:136 , VAL C:138 , HOH C:313
BINDING SITE FOR RESIDUE SO4 C 206
27
CC9
SOFTWARE
LYS B:31 , ASN C:144 , GLU C:145
BINDING SITE FOR RESIDUE SO4 C 207
28
DC1
SOFTWARE
LYS C:51
BINDING SITE FOR RESIDUE SO4 C 208
29
DC2
SOFTWARE
TRP B:79 , SER D:46 , PRO D:47 , VAL D:48 , CYS D:49 , LEU D:113 , ARG D:122 , HOH D:327
BINDING SITE FOR RESIDUE DTD D 201
30
DC3
SOFTWARE
HIS D:110 , GLU D:111 , ASP D:112 , HOH D:341
BINDING SITE FOR RESIDUE SO4 D 202
31
DC4
SOFTWARE
LYS A:31 , ASN D:144 , GLU D:145
BINDING SITE FOR RESIDUE SO4 D 203
32
DC5
SOFTWARE
SO4 A:210 , LEU D:4 , ASN D:107 , LYS D:136
BINDING SITE FOR RESIDUE SO4 D 204
33
DC6
SOFTWARE
ARG D:57 , GLN D:62 , ARG D:89 , HOH D:343
BINDING SITE FOR RESIDUE SO4 D 205
34
DC7
SOFTWARE
ARG C:32 , ARG D:32
BINDING SITE FOR RESIDUE SO4 D 206
35
DC8
SOFTWARE
ARG D:100 , LYS D:104 , MET D:118 , HOH D:361
BINDING SITE FOR RESIDUE SO4 D 207
36
DC9
SOFTWARE
LYS A:31 , ARG A:32 , LYS D:51
BINDING SITE FOR RESIDUE SO4 D 208
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4gqca_ (A:)
1b: SCOP_d4gqcb_ (B:)
1c: SCOP_d4gqcc_ (C:)
1d: SCOP_d4gqcd_ (D:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Bacterioferritin comigratory protein
(4)
Aeropyrum pernix [TaxId: 56636]
(4)
1a
d4gqca_
A:
1b
d4gqcb_
B:
1c
d4gqcc_
C:
1d
d4gqcd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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