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4GPH
Biol. Unit 1
Info
Asym.Unit (233 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (78 KB)
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(1)
Title
:
STRUCTURE OF HMUO, HEME OXYGENASE FROM CORYNEBACTERIUM DIPHTHERIAE, IN COMPLEX WITH THE PUTATIVE REACTION INTERMEDIATES BETWEEN FE3+-BILIVERDIN AND BILIVERDIN (DATA SET IV)
Authors
:
M. Unno, M. Ikeda-Saito
Date
:
21 Aug 12 (Deposition) - 21 Aug 13 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Helix, Heme Degradation, Heme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Unno, A. Ardevol, C. Rovira, M. Ikeda-Saito
Crystal Structures Of The Substrate-Free And The Product-Bound Forms Of Hmuo, A Heme Oxygenase From Corynebacterium Diphtheriae
To Be Published
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ASCORBIC ACID (ASCa)
2a: BILIVERDINE IX ALPHA (BLAa)
2b: BILIVERDINE IX ALPHA (BLAb)
2c: BILIVERDINE IX ALPHA (BLAc)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
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No.
Name
Count
Type
Full Name
1
ASC
-1
Ligand/Ion
ASCORBIC ACID
2
BLA
1
Ligand/Ion
BILIVERDINE IX ALPHA
3
FE
-1
Ligand/Ion
FE (III) ION
4
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:20 , BLA A:3002 , HOH A:3161
BINDING SITE FOR RESIDUE FE A 3001
2
AC2
SOFTWARE
LYS A:13 , HIS A:20 , ALA A:23 , GLU A:24 , MET A:29 , LEU A:33 , TYR A:130 , VAL A:131 , GLY A:135 , SER A:138 , GLY A:139 , ARG A:177 , PHE A:201 , ASN A:204 , PHE A:208 , FE A:3001 , HOH A:3135 , HOH A:3161 , HOH A:3175
BINDING SITE FOR RESIDUE BLA A 3002
3
AC3
SOFTWARE
SER A:26 , THR A:27 , HIS A:205 , HOH A:3155
BINDING SITE FOR RESIDUE SO4 A 3003
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4gpha_ (A:)
1b: SCOP_d4gphb_ (B:)
1c: SCOP_d4gphc_ (C:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Heme oxygenase-like
(107)
Superfamily
:
Heme oxygenase-like
(107)
Family
:
Eukaryotic type heme oxygenase
(69)
Protein domain
:
Heme oxygenase HmuO
(16)
Corynebacterium diphtheriae [TaxId: 1717]
(16)
1a
d4gpha_
A:
1b
d4gphb_
B:
1c
d4gphc_
C:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (233 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
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Biol.Unit 3 (78 KB)
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