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4GPH
Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (78 KB)
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(1)
Title
:
STRUCTURE OF HMUO, HEME OXYGENASE FROM CORYNEBACTERIUM DIPHTHERIAE, IN COMPLEX WITH THE PUTATIVE REACTION INTERMEDIATES BETWEEN FE3+-BILIVERDIN AND BILIVERDIN (DATA SET IV)
Authors
:
M. Unno, M. Ikeda-Saito
Date
:
21 Aug 12 (Deposition) - 21 Aug 13 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Helix, Heme Degradation, Heme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Unno, A. Ardevol, C. Rovira, M. Ikeda-Saito
Crystal Structures Of The Substrate-Free And The Product-Bound Forms Of Hmuo, A Heme Oxygenase From Corynebacterium Diphtheriae
To Be Published
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: ASCORBIC ACID (ASCa)
2a: BILIVERDINE IX ALPHA (BLAa)
2b: BILIVERDINE IX ALPHA (BLAb)
2c: BILIVERDINE IX ALPHA (BLAc)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ASC
1
Ligand/Ion
ASCORBIC ACID
2
BLA
3
Ligand/Ion
BILIVERDINE IX ALPHA
3
FE
2
Ligand/Ion
FE (III) ION
4
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:20 , BLA A:3002 , HOH A:3161
BINDING SITE FOR RESIDUE FE A 3001
02
AC2
SOFTWARE
LYS A:13 , HIS A:20 , ALA A:23 , GLU A:24 , MET A:29 , LEU A:33 , TYR A:130 , VAL A:131 , GLY A:135 , SER A:138 , GLY A:139 , ARG A:177 , PHE A:201 , ASN A:204 , PHE A:208 , FE A:3001 , HOH A:3135 , HOH A:3161 , HOH A:3175
BINDING SITE FOR RESIDUE BLA A 3002
03
AC3
SOFTWARE
SER A:26 , THR A:27 , HIS A:205 , HOH A:3155
BINDING SITE FOR RESIDUE SO4 A 3003
04
AC4
SOFTWARE
LYS B:313 , HIS B:320 , GLU B:324 , LEU B:333 , TYR B:430 , VAL B:431 , GLY B:435 , SER B:438 , ILE B:443 , ARG B:477 , PHE B:501 , PHE B:508 , HOH B:740 , HOH B:890
BINDING SITE FOR RESIDUE BLA B 601
05
AC5
SOFTWARE
SER B:326 , THR B:327 , HIS B:505 , HOH B:838 , HOH B:851
BINDING SITE FOR RESIDUE SO4 B 602
06
AC6
SOFTWARE
GLY B:367 , ALA B:369 , GLU B:370 , SER B:371 , HOH B:764 , HOH B:781 , HOH B:783
BINDING SITE FOR RESIDUE SO4 B 603
07
AC7
SOFTWARE
VAL B:382 , ARG B:385 , GLY B:459 , HOH B:722 , HOH B:869
BINDING SITE FOR RESIDUE SO4 B 604
08
AC8
SOFTWARE
LYS B:470 , LYS B:473 , ARG B:477 , HOH B:862 , HOH B:879
BINDING SITE FOR RESIDUE SO4 B 605
09
AC9
SOFTWARE
VAL B:442 , ARG B:445
BINDING SITE FOR RESIDUE SO4 B 606
10
BC1
SOFTWARE
BLA C:902 , ASC C:903
BINDING SITE FOR RESIDUE FE C 901
11
BC2
SOFTWARE
LYS C:613 , HIS C:620 , MET C:629 , TYR C:730 , VAL C:731 , ARG C:732 , GLY C:735 , SER C:738 , ILE C:743 , ARG C:777 , PHE C:801 , ASN C:804 , PHE C:808 , FE C:901 , ASC C:903 , HOH C:1025 , HOH C:1054 , HOH C:1062 , HOH C:1068 , HOH C:1159
BINDING SITE FOR RESIDUE BLA C 902
12
BC3
SOFTWARE
HIS C:620 , GLU C:624 , FE C:901 , BLA C:902 , HOH C:1136 , HOH C:1152
BINDING SITE FOR RESIDUE ASC C 903
13
BC4
SOFTWARE
GLY C:667 , ALA C:669 , GLU C:670 , SER C:671 , HOH C:1041 , HOH C:1051 , HOH C:1074
BINDING SITE FOR RESIDUE SO4 C 904
14
BC5
SOFTWARE
VAL C:682 , ARG C:685 , GLY C:759 , HOH C:1028
BINDING SITE FOR RESIDUE SO4 C 905
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4gpha_ (A:)
1b: SCOP_d4gphb_ (B:)
1c: SCOP_d4gphc_ (C:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Heme oxygenase-like
(107)
Superfamily
:
Heme oxygenase-like
(107)
Family
:
Eukaryotic type heme oxygenase
(69)
Protein domain
:
Heme oxygenase HmuO
(16)
Corynebacterium diphtheriae [TaxId: 1717]
(16)
1a
d4gpha_
A:
1b
d4gphb_
B:
1c
d4gphc_
C:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (233 KB)
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