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4GPF
Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (74 KB)
Biol.Unit 3 (74 KB)
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(1)
Title
:
STRUCTURE OF THE FE3+-BILIVERDIN-HMUO, HEME OXYGENASE FROM CORYNEBACTERIUM DIPHTHERIAE (DATA SET III)
Authors
:
M. Unno, M. Ikeda-Saito
Date
:
20 Aug 12 (Deposition) - 21 Aug 13 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Helix, Heme Degradation, Heme, Oxidoreductase
(Keyword Search:
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Reference
:
M. Unno, A. Ardevol, C. Rovira, M. Ikeda-Saito
Crystal Structure Of The Substrate-Free And The Product-Bound Forms Of Hmuo, A Heme Oxygenase From Corynebacterium Diphtheriae
To Be Published
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: BILIVERDINE IX ALPHA (BLAa)
1b: BILIVERDINE IX ALPHA (BLAb)
1c: BILIVERDINE IX ALPHA (BLAc)
2a: FE (III) ION (FEa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BLA
3
Ligand/Ion
BILIVERDINE IX ALPHA
2
FE
1
Ligand/Ion
FE (III) ION
3
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:13 , HIS A:20 , GLU A:24 , MET A:29 , LEU A:33 , TYR A:130 , VAL A:131 , GLY A:135 , SER A:138 , ARG A:177 , PHE A:201 , ASN A:204 , PHE A:208 , FE A:902 , SO4 A:905 , HOH A:1039 , HOH A:1062 , HOH A:1069 , HOH A:1070
BINDING SITE FOR RESIDUE BLA A 901
02
AC2
SOFTWARE
HIS A:20 , BLA A:901
BINDING SITE FOR RESIDUE FE A 902
03
AC3
SOFTWARE
GLY A:67 , ALA A:69 , GLU A:70 , SER A:71 , HOH A:1021 , HOH A:1036
BINDING SITE FOR RESIDUE SO4 A 903
04
AC4
SOFTWARE
SER A:26 , THR A:27 , HIS A:205 , HOH A:1038
BINDING SITE FOR RESIDUE SO4 A 904
05
AC5
SOFTWARE
LYS A:173 , ARG A:177 , BLA A:901
BINDING SITE FOR RESIDUE SO4 A 905
06
AC6
SOFTWARE
SER B:326 , THR B:327 , HIS B:505 , HOH B:785
BINDING SITE FOR RESIDUE SO4 B 601
07
AC7
SOFTWARE
LYS B:470 , LYS B:473 , ARG B:477 , HOH B:792
BINDING SITE FOR RESIDUE SO4 B 602
08
AC8
SOFTWARE
GLY B:367 , ALA B:369 , GLU B:370 , SER B:371 , HOH B:747 , HOH B:761 , HOH B:787
BINDING SITE FOR RESIDUE SO4 B 603
09
AC9
SOFTWARE
ARG B:385 , HOH B:706
BINDING SITE FOR RESIDUE SO4 B 604
10
BC1
SOFTWARE
ARG B:399
BINDING SITE FOR RESIDUE SO4 B 605
11
BC2
SOFTWARE
LYS B:313 , HIS B:320 , GLU B:324 , MET B:329 , LEU B:333 , TYR B:430 , VAL B:431 , GLY B:435 , SER B:438 , GLY B:439 , ILE B:443 , ARG B:477 , PHE B:501 , PHE B:508 , HOH B:726 , HOH B:814
BINDING SITE FOR RESIDUE BLA B 606
12
BC3
SOFTWARE
SER C:626 , THR C:627 , HIS C:805 , HOH C:1129
BINDING SITE FOR RESIDUE SO4 C 901
13
BC4
SOFTWARE
GLY C:638 , VAL C:639 , ALA C:640
BINDING SITE FOR RESIDUE SO4 C 902
14
BC5
SOFTWARE
ALA C:669 , GLU C:670 , SER C:671 , HOH C:1021 , HOH C:1069 , HOH C:1075
BINDING SITE FOR RESIDUE SO4 C 903
15
BC6
SOFTWARE
VAL C:682 , ARG C:685 , HOH C:1018 , HOH C:1026
BINDING SITE FOR RESIDUE SO4 C 904
16
BC7
SOFTWARE
LYS C:613 , HIS C:620 , ALA C:623 , GLU C:624 , TYR C:730 , VAL C:731 , GLY C:735 , SER C:738 , ILE C:743 , ARG C:777 , PHE C:808 , HOH C:1023 , HOH C:1029 , HOH C:1057 , HOH C:1066 , HOH C:1105 , HOH C:1106
BINDING SITE FOR RESIDUE BLA C 905
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4gpfa_ (A:)
1b: SCOP_d4gpfb_ (B:)
1c: SCOP_d4gpfc_ (C:)
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Class
:
All alpha proteins
(14657)
Fold
:
Heme oxygenase-like
(107)
Superfamily
:
Heme oxygenase-like
(107)
Family
:
Eukaryotic type heme oxygenase
(69)
Protein domain
:
Heme oxygenase HmuO
(16)
Corynebacterium diphtheriae [TaxId: 1717]
(16)
1a
d4gpfa_
A:
1b
d4gpfb_
B:
1c
d4gpfc_
C:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (221 KB)
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