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4GO2
Asym. Unit
Info
Asym.Unit (354 KB)
Biol.Unit 1 (345 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF 10'FORMYLTETRAHYDROFOLATE DEHYDROGENASE IN COMPLEX WITH THIO-NADP
Authors
:
Y. Tsybovsky
Date
:
18 Aug 12 (Deposition) - 23 Jan 13 (Release) - 22 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Aldehyde Dehydrogenase, Fdh, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tsybovsky, Y. Malakhau, K. C. Strickland, S. A. Krupenko
The Mechanism Of Discrimination Between Oxidized And Reduce Coenzyme In The Aldehyde Dehydrogenase Domain Of Aldh1L1.
Chem. Biol. Interact V. 202 62 2013
[
close entry info
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Hetero Components
(3, 36)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: 7-THIONICOTINAMIDE-ADENINE-DINUCLE... (TAPa)
3b: 7-THIONICOTINAMIDE-ADENINE-DINUCLE... (TAPb)
3c: 7-THIONICOTINAMIDE-ADENINE-DINUCLE... (TAPc)
3d: 7-THIONICOTINAMIDE-ADENINE-DINUCLE... (TAPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
SO4
28
Ligand/Ion
SULFATE ION
3
TAP
4
Ligand/Ion
7-THIONICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:852 , ARG C:554
BINDING SITE FOR RESIDUE SO4 A 3001
02
AC2
SOFTWARE
ARG A:636 , PRO A:641
BINDING SITE FOR RESIDUE SO4 A 3002
03
AC3
SOFTWARE
ARG A:764 , TYR A:799
BINDING SITE FOR RESIDUE SO4 A 3003
04
AC4
SOFTWARE
ARG A:551 , ARG A:554 , TYR C:848
BINDING SITE FOR RESIDUE SO4 A 3004
05
AC5
SOFTWARE
ASN A:548 , GLN B:528
BINDING SITE FOR RESIDUE SO4 A 3005
06
AC6
SOFTWARE
ASN A:738 , GLU A:741 , ARG A:781 , HOH A:3265 , HOH C:1356
BINDING SITE FOR RESIDUE SO4 A 3006
07
AC7
SOFTWARE
LYS A:669 , LEU A:893 , ARG A:894 , ILE A:895 , HOH A:3240 , HOH A:3267 , GLY B:881 , LYS B:882 , HOH B:1102
BINDING SITE FOR RESIDUE SO4 A 3007
08
AC8
SOFTWARE
TYR A:575 , ASN A:706 , CYS A:707 , ASN A:864 , THR A:866
BINDING SITE FOR RESIDUE GOL A 3008
09
AC9
SOFTWARE
VAL A:570 , ILE A:571 , PRO A:572 , TRP A:573 , LYS A:597 , ALA A:599 , GLN A:600 , SER A:629 , GLY A:630 , GLY A:634 , GLN A:635 , PHE A:648 , THR A:649 , GLY A:650 , SER A:651 , VAL A:654 , HIS A:657 , ILE A:658 , GLU A:673 , GLY A:675 , CYS A:707 , GLU A:804 , PHE A:806 , HOH A:3216 , HOH A:3264 , HOH A:3345 , HOH A:3346 , HOH A:3347 , HOH A:3348
BINDING SITE FOR RESIDUE TAP A 3009
10
BC1
SOFTWARE
ARG B:554 , ASP D:851 , LYS D:852 , HOH D:1263
BINDING SITE FOR RESIDUE SO4 B 1001
11
BC2
SOFTWARE
ASP B:851 , LYS B:852 , ARG D:554
BINDING SITE FOR RESIDUE SO4 B 1002
12
BC3
SOFTWARE
ARG B:636 , PRO B:641
BINDING SITE FOR RESIDUE SO4 B 1003
13
BC4
SOFTWARE
ARG B:764 , TYR B:799
BINDING SITE FOR RESIDUE SO4 B 1004
14
BC5
SOFTWARE
ARG B:551 , ARG B:554
BINDING SITE FOR RESIDUE SO4 B 1005
15
BC6
SOFTWARE
GLN A:528 , ASN B:548 , HOH B:1264
BINDING SITE FOR RESIDUE SO4 B 1006
16
BC7
SOFTWARE
ASN B:738 , GLU B:741 , ARG B:781 , HOH B:1232
BINDING SITE FOR RESIDUE SO4 B 1007
17
BC8
SOFTWARE
GLY A:881 , LYS A:882 , HOH A:3104 , LYS B:669 , LEU B:893 , ARG B:894 , ILE B:895 , HOH B:1141 , HOH B:1313
BINDING SITE FOR RESIDUE SO4 B 1008
18
BC9
SOFTWARE
TYR B:575 , ASN B:706 , ASN B:864 , THR B:866
BINDING SITE FOR RESIDUE GOL B 1009
19
CC1
SOFTWARE
VAL B:570 , ILE B:571 , TRP B:573 , LYS B:597 , ALA B:599 , GLN B:600 , SER B:629 , GLY B:630 , GLY B:634 , GLN B:635 , PHE B:648 , THR B:649 , GLY B:650 , SER B:651 , VAL B:654 , HIS B:657 , ILE B:658 , GLU B:673 , GLY B:675 , CYS B:707 , GLU B:804 , PHE B:806 , HOH B:1142 , HOH B:1161 , HOH B:1234 , HOH B:1346 , HOH B:1347
BINDING SITE FOR RESIDUE TAP B 1010
20
CC2
SOFTWARE
ARG A:554 , LYS C:852 , HOH C:1183
BINDING SITE FOR RESIDUE SO4 C 1001
21
CC3
SOFTWARE
ARG C:636 , PRO C:641
BINDING SITE FOR RESIDUE SO4 C 1002
22
CC4
SOFTWARE
ARG C:764
BINDING SITE FOR RESIDUE SO4 C 1003
23
CC5
SOFTWARE
ARG C:551 , ARG C:554
BINDING SITE FOR RESIDUE SO4 C 1004
24
CC6
SOFTWARE
ASN C:738 , ARG C:781 , HOH C:1143
BINDING SITE FOR RESIDUE SO4 C 1005
25
CC7
SOFTWARE
LYS C:669 , LEU C:893 , ARG C:894 , ILE C:895 , HOH C:1178 , HOH C:1243 , GLY D:881 , LYS D:882 , HOH D:1103
BINDING SITE FOR RESIDUE SO4 C 1006
26
CC8
SOFTWARE
LEU A:416 , THR A:417 , LYS C:415 , ARG C:742
BINDING SITE FOR RESIDUE SO4 C 1007
27
CC9
SOFTWARE
TYR C:575 , ASN C:706 , ILE C:708 , ASN C:864 , THR C:866
BINDING SITE FOR RESIDUE GOL C 1008
28
DC1
SOFTWARE
VAL C:570 , ILE C:571 , TRP C:573 , LYS C:597 , ALA C:599 , GLN C:600 , SER C:629 , GLY C:630 , GLY C:634 , GLN C:635 , PHE C:648 , THR C:649 , GLY C:650 , SER C:651 , VAL C:654 , HIS C:657 , ILE C:658 , GLU C:673 , GLY C:675 , CYS C:707 , GLU C:804 , PHE C:806 , HOH C:1162 , HOH C:1196 , HOH C:1237 , HOH C:1378 , HOH C:1382 , HOH C:1383
BINDING SITE FOR RESIDUE TAP C 1009
29
DC2
SOFTWARE
ARG D:636 , PRO D:641
BINDING SITE FOR RESIDUE SO4 D 1001
30
DC3
SOFTWARE
ARG D:764
BINDING SITE FOR RESIDUE SO4 D 1002
31
DC4
SOFTWARE
TYR B:848 , ARG D:551 , ARG D:554
BINDING SITE FOR RESIDUE SO4 D 1003
32
DC5
SOFTWARE
ASN C:548 , GLN D:528 , HOH D:1307
BINDING SITE FOR RESIDUE SO4 D 1004
33
DC6
SOFTWARE
THR D:445 , ASN D:738 , ARG D:781
BINDING SITE FOR RESIDUE SO4 D 1005
34
DC7
SOFTWARE
GLY C:881 , LYS C:882 , HOH C:1109 , LYS D:669 , LEU D:893 , ARG D:894 , ILE D:895 , HOH D:1266
BINDING SITE FOR RESIDUE SO4 D 1006
35
DC8
SOFTWARE
TYR D:575 , ASN D:706 , THR D:866
BINDING SITE FOR RESIDUE GOL D 1007
36
DC9
SOFTWARE
VAL D:570 , ILE D:571 , PRO D:572 , TRP D:573 , LYS D:597 , ALA D:599 , GLN D:600 , SER D:629 , GLY D:630 , GLY D:634 , GLN D:635 , PHE D:648 , THR D:649 , GLY D:650 , SER D:651 , VAL D:654 , HIS D:657 , ILE D:658 , GLU D:673 , GLY D:675 , CYS D:707 , GLU D:804 , PHE D:806 , HOH D:1132 , HOH D:1145 , HOH D:1182 , HOH D:1344 , HOH D:1345
BINDING SITE FOR RESIDUE TAP D 1008
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close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4go2a_ (A:)
1b: SCOP_d4go2b_ (B:)
1c: SCOP_d4go2c_ (C:)
1d: SCOP_d4go2d_ (D:)
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(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(12)
1a
d4go2a_
A:
1b
d4go2b_
B:
1c
d4go2c_
C:
1d
d4go2d_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain D
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (354 KB)
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