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4GNZ
Asym. Unit
Info
Asym.Unit (350 KB)
Biol.Unit 1 (341 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C707S MUTANT OF C-TERMINAL DOMAIN OF 10'FORMYLTETRAHYDROFOLATE DEHYDROGENASE IN COMPLEX WITH NADP
Authors
:
Y. Tsybovsky
Date
:
17 Aug 12 (Deposition) - 23 Jan 13 (Release) - 22 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Aldehyde Dehydrogenase, Fdh, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tsybovsky, Y. Malakhau, K. C. Strickland, S. A. Krupenko
The Mechanism Of Discrimination Between Oxidized And Reduce Coenzyme In The Aldehyde Dehydrogenase Domain Of Aldh1L1.
Chem. Biol. Interact V. 202 62 2013
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close entry info
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Hetero Components
(3, 36)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SO4
28
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:570 , ILE A:571 , PRO A:572 , TRP A:573 , ASN A:574 , LYS A:597 , ALA A:599 , GLN A:600 , SER A:629 , GLY A:630 , GLY A:634 , GLN A:635 , PHE A:648 , THR A:649 , GLY A:650 , SER A:651 , VAL A:654 , HIS A:657 , ILE A:658 , GLU A:673 , LEU A:674 , GLY A:675 , SER A:707 , GLU A:804 , PHE A:806 , LEU A:834 , PHE A:872 , HOH A:1143 , HOH A:1160 , HOH A:1179 , HOH A:1225 , HOH A:1251 , HOH A:1295 , HOH A:1303 , HOH A:1323
BINDING SITE FOR RESIDUE NAP A 1001
02
AC2
SOFTWARE
LYS A:852 , ARG C:554
BINDING SITE FOR RESIDUE SO4 A 1002
03
AC3
SOFTWARE
ARG A:554 , LYS C:852
BINDING SITE FOR RESIDUE SO4 A 1003
04
AC4
SOFTWARE
ARG A:636 , PRO A:641
BINDING SITE FOR RESIDUE SO4 A 1004
05
AC5
SOFTWARE
ARG A:764 , TYR A:799
BINDING SITE FOR RESIDUE SO4 A 1005
06
AC6
SOFTWARE
ARG A:551 , ARG A:554 , TYR C:848
BINDING SITE FOR RESIDUE SO4 A 1006
07
AC7
SOFTWARE
ASN A:548 , HOH A:1292 , GLN B:528
BINDING SITE FOR RESIDUE SO4 A 1007
08
AC8
SOFTWARE
LYS A:520 , GLN A:528 , ASN B:548 , HOH B:1246
BINDING SITE FOR RESIDUE SO4 A 1008
09
AC9
SOFTWARE
ASN A:738 , GLU A:741 , ARG A:781
BINDING SITE FOR RESIDUE SO4 A 1009
10
BC1
SOFTWARE
GLY A:881 , LYS A:882 , HOH A:1102 , HOH A:1318 , LYS B:669 , ARG B:894 , ILE B:895 , HOH B:1230
BINDING SITE FOR RESIDUE SO4 A 1010
11
BC2
SOFTWARE
LYS A:669 , LEU A:893 , ARG A:894 , ILE A:895 , HOH A:1202 , HOH A:1293 , HOH A:1342 , GLY B:881 , LYS B:882 , HOH B:1102
BINDING SITE FOR RESIDUE SO4 A 1011
12
BC3
SOFTWARE
TYR A:575 , TRP A:582 , ASN A:706 , ASN A:864 , THR A:866 , HOH A:1373
BINDING SITE FOR RESIDUE GOL A 1012
13
BC4
SOFTWARE
VAL B:570 , ILE B:571 , PRO B:572 , TRP B:573 , ASN B:574 , LYS B:597 , ALA B:599 , GLN B:600 , SER B:629 , GLY B:630 , GLY B:634 , GLN B:635 , PHE B:648 , THR B:649 , GLY B:650 , SER B:651 , VAL B:654 , HIS B:657 , GLU B:673 , LEU B:674 , GLY B:675 , SER B:707 , GLU B:804 , PHE B:806 , LEU B:834 , PHE B:872 , HOH B:1132 , HOH B:1142 , HOH B:1148 , HOH B:1155 , HOH B:1186 , HOH B:1197 , HOH B:1237 , HOH B:1239 , HOH B:1299 , HOH B:1309
BINDING SITE FOR RESIDUE NAP B 1001
14
BC5
SOFTWARE
ARG B:554 , HOH B:1236 , LYS D:852
BINDING SITE FOR RESIDUE SO4 B 1002
15
BC6
SOFTWARE
ASP B:851 , LYS B:852 , HOH B:1206 , ARG D:554
BINDING SITE FOR RESIDUE SO4 B 1003
16
BC7
SOFTWARE
ARG B:636 , PRO B:641
BINDING SITE FOR RESIDUE SO4 B 1004
17
BC8
SOFTWARE
ARG B:764
BINDING SITE FOR RESIDUE SO4 B 1005
18
BC9
SOFTWARE
ARG B:551 , ARG B:554 , HOH B:1327 , TYR D:848
BINDING SITE FOR RESIDUE SO4 B 1006
19
CC1
SOFTWARE
ASN B:738 , GLU B:741 , ARG B:781 , HOH B:1130 , HOH B:1288
BINDING SITE FOR RESIDUE SO4 B 1007
20
CC2
SOFTWARE
TYR B:575 , ASN B:706 , ASN B:864 , THR B:866 , HOH B:1345
BINDING SITE FOR RESIDUE GOL B 1008
21
CC3
SOFTWARE
VAL C:570 , ILE C:571 , PRO C:572 , TRP C:573 , ASN C:574 , LYS C:597 , ALA C:599 , GLN C:600 , SER C:629 , GLY C:630 , GLY C:634 , GLN C:635 , PHE C:648 , THR C:649 , GLY C:650 , SER C:651 , VAL C:654 , HIS C:657 , ILE C:658 , GLU C:673 , LEU C:674 , GLY C:675 , SER C:707 , GLU C:804 , PHE C:806 , LEU C:834 , PHE C:872 , HOH C:1168 , HOH C:1192 , HOH C:1223 , HOH C:1226 , HOH C:1229 , HOH C:1243 , HOH C:1247 , HOH C:1253 , HOH C:1291 , HOH C:1351
BINDING SITE FOR RESIDUE NAP C 1001
22
CC4
SOFTWARE
ARG C:636 , PRO C:641
BINDING SITE FOR RESIDUE SO4 C 1002
23
CC5
SOFTWARE
ARG C:764
BINDING SITE FOR RESIDUE SO4 C 1003
24
CC6
SOFTWARE
ARG C:551 , ARG C:554 , HOH C:1337
BINDING SITE FOR RESIDUE SO4 C 1004
25
CC7
SOFTWARE
ASN C:738 , ARG C:781 , HOH C:1218
BINDING SITE FOR RESIDUE SO4 C 1005
26
CC8
SOFTWARE
LYS C:669 , ARG C:894 , ILE C:895 , HOH C:1173 , HOH C:1271 , HOH C:1281 , GLY D:881 , LYS D:882
BINDING SITE FOR RESIDUE SO4 C 1006
27
CC9
SOFTWARE
LEU A:416 , THR A:417 , LYS C:415 , ARG C:742
BINDING SITE FOR RESIDUE SO4 C 1007
28
DC1
SOFTWARE
TYR C:575 , TRP C:582 , ASN C:706 , ASN C:864 , THR C:866 , HOH C:1389
BINDING SITE FOR RESIDUE GOL C 1008
29
DC2
SOFTWARE
VAL D:570 , ILE D:571 , PRO D:572 , TRP D:573 , ASN D:574 , LYS D:597 , ALA D:599 , GLN D:600 , SER D:629 , GLY D:630 , GLY D:634 , GLN D:635 , PHE D:648 , THR D:649 , GLY D:650 , SER D:651 , VAL D:654 , HIS D:657 , ILE D:658 , GLU D:673 , LEU D:674 , GLY D:675 , SER D:707 , GLU D:804 , PHE D:806 , LEU D:834 , PHE D:872 , HOH D:1138 , HOH D:1141 , HOH D:1146 , HOH D:1161 , HOH D:1236 , HOH D:1247 , HOH D:1267 , HOH D:1269 , HOH D:1328 , HOH D:1333
BINDING SITE FOR RESIDUE NAP D 1001
30
DC3
SOFTWARE
ARG D:636 , PRO D:641 , HOH D:1287
BINDING SITE FOR RESIDUE SO4 D 1002
31
DC4
SOFTWARE
ARG D:764
BINDING SITE FOR RESIDUE SO4 D 1003
32
DC5
SOFTWARE
TYR B:848 , ARG D:551 , ARG D:554
BINDING SITE FOR RESIDUE SO4 D 1004
33
DC6
SOFTWARE
ASN C:548 , LYS D:520 , GLN D:528 , HOH D:1184
BINDING SITE FOR RESIDUE SO4 D 1005
34
DC7
SOFTWARE
ASN D:738 , ARG D:781
BINDING SITE FOR RESIDUE SO4 D 1006
35
DC8
SOFTWARE
GLY C:881 , LYS C:882 , LYS D:669 , LEU D:893 , ARG D:894 , ILE D:895 , HOH D:1114 , HOH D:1209 , HOH D:1222 , HOH D:1272
BINDING SITE FOR RESIDUE SO4 D 1007
36
DC9
SOFTWARE
TYR D:575 , TRP D:582 , ASN D:706 , ASN D:864 , THR D:866
BINDING SITE FOR RESIDUE GOL D 1008
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4gnza_ (A:)
1b: SCOP_d4gnzb_ (B:)
1c: SCOP_d4gnzc_ (C:)
1d: SCOP_d4gnzd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(12)
1a
d4gnza_
A:
1b
d4gnzb_
B:
1c
d4gnzc_
C:
1d
d4gnzd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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