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4GNM
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (114 KB)
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(1)
Title
:
STRUCTURE OF RAT CYTOSOLIC PEPCK LD_2G IN COMPLEX WITH OXALATE AND GTP
Authors
:
T. A. Johnson, T. Holyoak
Date
:
17 Aug 12 (Deposition) - 03 Jul 13 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Kinase, Gluconeogenesis, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. A. Johnson, T. Holyoak
The {Omega}-Loop Lid Domain Of Phosphoenolpyruvate Carboxykinase Is Essential For Catalytic Function.
Biochemistry V. 51 9547 2012
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: OXALATE ION (OXLa)
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No.
Name
Count
Type
Full Name
1
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
2
MN
2
Ligand/Ion
MANGANESE (II) ION
3
NA
2
Ligand/Ion
SODIUM ION
4
OXL
1
Ligand/Ion
OXALATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:264 , PRO A:285 , SER A:286 , ALA A:287 , CYS A:288 , GLY A:289 , LYS A:290 , THR A:291 , ASN A:292 , ASP A:311 , VAL A:335 , ARG A:405 , ARG A:436 , TRP A:516 , PHE A:517 , PHE A:525 , GLY A:529 , PHE A:530 , ASN A:533 , MN A:702 , MN A:703 , OXL A:706 , HOH A:816 , HOH A:829 , HOH A:835 , HOH A:849 , HOH A:854 , HOH A:902 , HOH A:918 , HOH A:1004 , HOH A:1073 , HOH A:1099 , HOH A:1178 , HOH A:1188
BINDING SITE FOR RESIDUE GTP A 701
2
AC2
SOFTWARE
LYS A:244 , HIS A:264 , ASP A:311 , GTP A:701 , OXL A:706
BINDING SITE FOR RESIDUE MN A 702
3
AC3
SOFTWARE
THR A:291 , GTP A:701 , HOH A:820 , HOH A:849 , HOH A:854
BINDING SITE FOR RESIDUE MN A 703
4
AC4
SOFTWARE
LEU A:79 , ASN A:208 , HOH A:950 , HOH A:976 , HOH A:1065
BINDING SITE FOR RESIDUE NA A 704
5
AC5
SOFTWARE
GLU A:63 , HIS A:502 , GLU A:607 , HOH A:872 , HOH A:1350 , HOH A:1372
BINDING SITE FOR RESIDUE NA A 705
6
AC6
SOFTWARE
ARG A:87 , LYS A:244 , HIS A:264 , SER A:286 , ASP A:311 , ARG A:405 , GTP A:701 , MN A:702 , HOH A:865 , HOH A:1042 , HOH A:1371
BINDING SITE FOR RESIDUE OXL A 706
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4gnma1 (A:4-259)
2a: SCOP_d4gnma2 (A:260-622)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PEP carboxykinase N-terminal domain
(54)
Superfamily
:
PEP carboxykinase N-terminal domain
(54)
Family
:
PEP carboxykinase N-terminal domain
(48)
Protein domain
:
Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
(32)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(25)
1a
d4gnma1
A:4-259
Fold
:
PEP carboxykinase-like
(61)
Superfamily
:
PEP carboxykinase-like
(61)
Family
:
PEP carboxykinase C-terminal domain
(48)
Protein domain
:
Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
(32)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(25)
2a
d4gnma2
A:260-622
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (119 KB)
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