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4GN6
Asym. Unit
Info
Asym.Unit (111 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
STRUCTURE OF PARACETAMOL BOUND BOVINE LACTOPEROXIDASE AT 2.45A RESOLUTION.
Authors
:
N. Pandey, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Date
:
16 Aug 12 (Deposition) - 19 Sep 12 (Release) - 19 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.42
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Bovine Lactoperoxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Pandey, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Structure Of Paracetamol Bound Bovine Lactoperoxidase At 2. 45A Resolution
To Be Published
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Hetero Components
(10, 26)
Info
All Hetero Components
01a: CALCIUM ION (CAa)
02a: 1,2-ETHANEDIOL (EDOa)
03a: GLYCEROL (GOLa)
04a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
05a: IODIDE ION (IODa)
05b: IODIDE ION (IODb)
05c: IODIDE ION (IODc)
05d: IODIDE ION (IODd)
05e: IODIDE ION (IODe)
05f: IODIDE ION (IODf)
05g: IODIDE ION (IODg)
05h: IODIDE ION (IODh)
05i: IODIDE ION (IODi)
05j: IODIDE ION (IODj)
05k: IODIDE ION (IODk)
05l: IODIDE ION (IODl)
05m: IODIDE ION (IODm)
06a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
07a: N-ACETYL-D-GLUCOSAMINE (NAGa)
07b: N-ACETYL-D-GLUCOSAMINE (NAGb)
07c: N-ACETYL-D-GLUCOSAMINE (NAGc)
07d: N-ACETYL-D-GLUCOSAMINE (NAGd)
07e: N-ACETYL-D-GLUCOSAMINE (NAGe)
08a: THIOCYANATE ION (SCNa)
09a: PHOSPHOSERINE (SEPa)
10a: N-(4-HYDROXYPHENYL)ACETAMIDE (TYLE... (TYLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
1
Ligand/Ion
GLYCEROL
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
IOD
13
Ligand/Ion
IODIDE ION
6
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
7
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
SCN
1
Ligand/Ion
THIOCYANATE ION
9
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
10
TYL
1
Ligand/Ion
N-(4-HYDROXYPHENYL)ACETAMIDE (TYLENOL)
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
BINDING SITE FOR RESIDUE CA A 601
02
AC2
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , ARG A:440 , TYL A:621 , HOH A:798
BINDING SITE FOR RESIDUE HEM A 602
03
AC3
SOFTWARE
ASN A:95 , ARG A:96 , PRO A:209 , ILE A:315 , IOD A:610 , HOH A:770 , HOH A:891
BINDING SITE FOR RESIDUE NAG A 603
04
AC4
SOFTWARE
ASN A:205 , SER A:208 , LEU A:210 , VAL A:215 , GLN A:217 , HOH A:794 , HOH A:884
BINDING SITE FOR RESIDUE NAG A 604
05
AC5
SOFTWARE
ASN A:332
BINDING SITE FOR RESIDUE NAG A 605
06
AC6
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , NAG A:607 , HOH A:730
BINDING SITE FOR RESIDUE NAG A 606
07
AC7
SOFTWARE
NAG A:606 , HOH A:751 , HOH A:868
BINDING SITE FOR RESIDUE NAG A 607
08
AC8
SOFTWARE
TRP A:46 , VAL A:342 , TRP A:452
BINDING SITE FOR RESIDUE IOD A 608
09
AC9
SOFTWARE
ASN A:95 , ARG A:96 , NAG A:603
BINDING SITE FOR RESIDUE IOD A 610
10
BC1
SOFTWARE
PHE A:229
BINDING SITE FOR RESIDUE IOD A 611
11
BC2
SOFTWARE
TRP A:530
BINDING SITE FOR RESIDUE IOD A 612
12
BC3
SOFTWARE
THR A:560
BINDING SITE FOR RESIDUE IOD A 613
13
BC4
SOFTWARE
HIS A:565 , ALA A:566 , PHE A:567
BINDING SITE FOR RESIDUE IOD A 614
14
BC5
SOFTWARE
PRO A:236 , THR A:425
BINDING SITE FOR RESIDUE IOD A 616
15
BC6
SOFTWARE
LYS A:462 , THR A:463
BINDING SITE FOR RESIDUE IOD A 617
16
BC7
SOFTWARE
HIS A:377
BINDING SITE FOR RESIDUE IOD A 618
17
BC8
SOFTWARE
ALA A:225
BINDING SITE FOR RESIDUE IOD A 619
18
BC9
SOFTWARE
PRO A:149 , ASN A:419 , HOH A:759
BINDING SITE FOR RESIDUE IOD A 620
19
CC1
SOFTWARE
HIS A:109 , PHE A:254 , ARG A:255 , GLU A:258 , PHE A:381 , HEM A:602 , HOH A:798
BINDING SITE FOR RESIDUE TYL A 621
20
CC2
SOFTWARE
SEP A:198 , LEU A:199 , ARG A:202 , LYS A:472 , ASN A:473 , LYS A:474
BINDING SITE FOR RESIDUE MPD A 622
21
CC3
SOFTWARE
ASN A:230 , CYS A:248
BINDING SITE FOR RESIDUE SCN A 623
22
CC4
SOFTWARE
PRO A:197 , SER A:201 , LYS A:472
BINDING SITE FOR RESIDUE EDO A 624
23
CC5
SOFTWARE
LEU A:36 , SER A:334 , ASP A:336 , ARG A:338 , HOH A:796
BINDING SITE FOR RESIDUE GOL A 625
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
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