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4GN5
Asym. Unit
Info
Asym.Unit (179 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
OBODY AM3L15 BOUND TO HEN EGG-WHITE LYSOZYME
Authors
:
J. D. Steemson, M. T. Liddament
Date
:
16 Aug 12 (Deposition) - 21 Aug 13 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Beta Barrel, Ob-Fold, Protein-Protein Complex, Novel Scaffold, Muraminidase, Enzyme Inhibition, Engineered Binding Protein, Inhibitor, De Novo Protein-Hydrolase Complex
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Reference
:
J. D. Steemson, M. Baake, J. Rakonjac, V. L. Arcus, M. T. Liddament
Tracking Molecular Recognition At The Atomic Level With A New Protein Scaffold Based On The Ob-Fold.
Plos One V. 9 86050 2014
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
2c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
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No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
EPE
3
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
GOL
4
Ligand/Ion
GLYCEROL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE C:34 , SER C:36 , ASN C:39 , ALA C:42 , ASN C:44 , ARG C:114 , HOH C:383 , HOH C:437
BINDING SITE FOR RESIDUE EPE C 201
2
AC2
SOFTWARE
ASN B:15 , ASN C:65 , ASN C:74 , ASN C:77 , ILE C:78 , PRO C:79
BINDING SITE FOR RESIDUE GOL C 202
3
AC3
SOFTWARE
LYS C:1 , VAL C:2 , PHE C:3 , GLY C:4 , GLU C:7 , HOH C:348 , HOH C:361 , HOH C:424 , LYS D:1 , VAL D:2
BINDING SITE FOR RESIDUE GOL C 203
4
AC4
SOFTWARE
SER C:81 , SER C:85 , SER C:86 , HOH C:307 , HOH C:385 , CYS D:6 , GLY D:126
BINDING SITE FOR RESIDUE EPE C 204
5
AC5
SOFTWARE
PHE D:34 , SER D:36 , ASN D:39 , ALA D:42 , ASN D:44 , HOH D:321 , HOH D:377 , HOH D:411 , HOH D:439
BINDING SITE FOR RESIDUE EPE D 201
6
AC6
SOFTWARE
ARG C:14 , ARG D:14 , HIS D:15 , ASP D:87 , ILE D:88 , HOH D:363
BINDING SITE FOR RESIDUE GOL D 202
7
AC7
SOFTWARE
ILE C:78 , THR C:89 , ALA C:90 , ASN C:93 , ARG D:128 , HOH D:371
BINDING SITE FOR RESIDUE GOL D 203
8
AC8
SOFTWARE
ALA D:122 , HOH D:307
BINDING SITE FOR RESIDUE ACT D 204
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4gn5c_ (C:)
1b: SCOP_d4gn5d_ (D:)
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Classes
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
Lysozyme
(696)
Chicken (Gallus gallus) [TaxId: 9031]
(459)
1a
d4gn5c_
C:
1b
d4gn5d_
D:
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CATH Domains
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Pfam Domains
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Asym.Unit (179 KB)
Header - Asym.Unit
Biol.Unit 1 (86 KB)
Header - Biol.Unit 1
Biol.Unit 2 (88 KB)
Header - Biol.Unit 2
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