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4GLO
Asym. Unit
Info
Asym.Unit (345 KB)
Biol.Unit 1 (333 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE HOMOLOG (TARGET EFI-505321) FROM BURKHOLDERIA MULTIVORANS, WITH BOUND NAD
Authors
:
M. W. Vetting, M. E. Hobbs, L. L. Morisco, S. R. Wasserman, S. Sojitra, H. F. M. Raushel, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (
Date
:
14 Aug 12 (Deposition) - 29 Aug 12 (Release) - 29 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Putative Sugar Dehydrogenase, Enzyme Function Initiative, Efi, Structural Genomics, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Vetting, M. E. Hobbs, L. L. Morisco, S. R. Wasserman, S. Sojitra, H. J. Imker, F. M. Raushel, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of A Short Chain Dehydrogenase Homolog (Target Efi-505321) From Burkholderia Multivorans, With Bound Nad
To Be Published
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
3
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
SO4
9
Ligand/Ion
SULFATE ION
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:14 , SER A:17 , GLY A:18 , ILE A:19 , ARG A:39 , VAL A:62 , GLU A:63 , LEU A:64 , ASN A:90 , TYR A:117 , ILE A:138 , SER A:139 , TYR A:153 , LYS A:157 , PRO A:183 , ALA A:184 , VAL A:186 , LEU A:190 , SO4 A:302 , HOH A:435 , HOH A:436 , HOH A:472 , HOH A:473 , HOH A:488 , HOH A:538 , HOH A:632
BINDING SITE FOR RESIDUE NAD A 301
02
AC2
SOFTWARE
ASN A:94 , SER A:140 , LYS A:141 , THR A:142 , GLN A:147 , TYR A:153 , ALA A:184 , NAD A:301 , HOH A:472 , HOH A:563
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
GLN A:65 , ARG A:112 , HOH A:537 , HOH A:594 , HOH A:625
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
ARG A:132 , PHE A:198 , GLU A:199 , HOH A:534 , HOH A:599 , HOH A:633 , ARG D:217 , HOH D:535
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
THR A:220 , PRO A:221 , ASP A:222 , HOH A:610
BINDING SITE FOR RESIDUE CL A 305
06
AC6
SOFTWARE
ALA A:143 , GLY A:158 , ALA B:143 , GLY B:158
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
THR A:145 , TYR A:250 , THR A:251 , HOH A:433 , THR C:251 , HIS C:252 , LEU C:253 , ARG C:255 , EDO C:306
BINDING SITE FOR RESIDUE EDO A 307
08
AC8
SOFTWARE
GLY B:14 , SER B:17 , ILE B:19 , ARG B:39 , VAL B:62 , GLU B:63 , LEU B:64 , ASN B:90 , TYR B:117 , ILE B:138 , SER B:139 , SER B:140 , TYR B:153 , LYS B:157 , PRO B:183 , ALA B:184 , VAL B:186 , LEU B:190 , SO4 B:302 , HOH B:425 , HOH B:447 , HOH B:459 , HOH B:469 , HOH B:508 , HOH B:515 , HOH B:590
BINDING SITE FOR RESIDUE NAD B 301
09
AC9
SOFTWARE
ASN B:94 , SER B:140 , LYS B:141 , THR B:142 , GLN B:147 , TYR B:153 , ALA B:184 , NAD B:301 , HOH B:469 , HOH B:654
BINDING SITE FOR RESIDUE SO4 B 302
10
BC1
SOFTWARE
ARG B:39 , GLN B:65 , ARG B:112 , HOH B:503 , HOH B:617
BINDING SITE FOR RESIDUE SO4 B 303
11
BC2
SOFTWARE
THR B:220 , PRO B:221 , ASP B:222 , HOH B:510
BINDING SITE FOR RESIDUE CL B 304
12
BC3
SOFTWARE
THR B:145 , TYR B:250 , THR B:251 , THR D:251 , HIS D:252 , LEU D:253 , ARG D:255 , EDO D:305 , HOH D:420
BINDING SITE FOR RESIDUE EDO B 305
13
BC4
SOFTWARE
GLY C:14 , SER C:17 , GLY C:18 , ILE C:19 , GLY C:20 , ARG C:39 , VAL C:62 , GLU C:63 , LEU C:64 , GLN C:65 , ASN C:90 , TYR C:117 , ILE C:138 , SER C:139 , SER C:140 , TYR C:153 , LYS C:157 , PRO C:183 , ALA C:184 , GLU C:185 , VAL C:186 , THR C:188 , PRO C:189 , SO4 C:302 , HOH C:495 , HOH C:567 , HOH C:568
BINDING SITE FOR RESIDUE NAD C 301
14
BC5
SOFTWARE
ASN C:94 , SER C:140 , LYS C:141 , THR C:142 , GLN C:147 , TYR C:153 , ALA C:184 , NAD C:301 , HOH C:488 , HOH C:494 , HOH C:495
BINDING SITE FOR RESIDUE SO4 C 302
15
BC6
SOFTWARE
ARG C:39 , GLN C:65 , ARG C:112
BINDING SITE FOR RESIDUE SO4 C 303
16
BC7
SOFTWARE
THR C:220 , PRO C:221 , ASP C:222 , HOH C:528 , HOH C:549
BINDING SITE FOR RESIDUE CL C 304
17
BC8
SOFTWARE
ALA C:143 , GLY C:158 , ALA D:143 , GLY D:158
BINDING SITE FOR RESIDUE EDO C 305
18
BC9
SOFTWARE
THR A:251 , HIS A:252 , LEU A:253 , ARG A:255 , EDO A:307 , THR C:145 , TYR C:250 , THR C:251 , HOH C:416
BINDING SITE FOR RESIDUE EDO C 306
19
CC1
SOFTWARE
GLY C:96 , ILE C:97 , GLY C:98 , LEU C:99 , ASP C:100 , ALA C:101 , ASN C:149
BINDING SITE FOR RESIDUE EDO C 307
20
CC2
SOFTWARE
GLY D:14 , SER D:17 , GLY D:18 , ILE D:19 , GLY D:20 , ARG D:39 , VAL D:62 , GLU D:63 , LEU D:64 , ASN D:90 , TYR D:117 , ILE D:138 , SER D:139 , SER D:140 , TYR D:153 , LYS D:157 , PRO D:183 , ALA D:184 , VAL D:186 , THR D:188 , SO4 D:302 , HOH D:459 , HOH D:489 , HOH D:543 , HOH D:549 , HOH D:588
BINDING SITE FOR RESIDUE NAD D 301
21
CC3
SOFTWARE
ASN D:94 , SER D:140 , LYS D:141 , THR D:142 , GLN D:147 , TYR D:153 , ALA D:184 , NAD D:301 , HOH D:447 , HOH D:489 , HOH D:546
BINDING SITE FOR RESIDUE SO4 D 302
22
CC4
SOFTWARE
ARG D:39 , GLN D:65 , ARG D:112 , HOH D:541
BINDING SITE FOR RESIDUE SO4 D 303
23
CC5
SOFTWARE
PRO D:221 , ASP D:222 , HOH D:502
BINDING SITE FOR RESIDUE CL D 304
24
CC6
SOFTWARE
THR B:251 , HIS B:252 , LEU B:253 , ARG B:255 , EDO B:305 , THR D:145 , TYR D:250 , THR D:251 , HOH D:424
BINDING SITE FOR RESIDUE EDO D 305
25
CC7
SOFTWARE
ASP A:226 , PRO D:234 , ARG D:235 , SER D:237 , HOH D:481 , HOH D:505
BINDING SITE FOR RESIDUE EDO D 306
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4gloa_ (A:)
1b: SCOP_d4gloc_ (C:)
1c: SCOP_d4glod_ (D:)
1d: SCOP_d4glob_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Burkholderia multivorans [TaxId: 395019]
(3)
1a
d4gloa_
A:
1b
d4gloc_
C:
1c
d4glod_
D:
1d
d4glob_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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