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4GK1
Asym. Unit
Info
Asym.Unit (342 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (51 KB)
Biol.Unit 4 (50 KB)
Biol.Unit 5 (51 KB)
Biol.Unit 6 (51 KB)
Biol.Unit 7 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CD23 LECTIN DOMAIN MUTANT D270A
Authors
:
D. Yuan, B. J. Sutton, B. Dhaliwal
Date
:
10 Aug 12 (Deposition) - 26 Jun 13 (Release) - 14 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.24
Chains
:
Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Keywords
:
Receptor, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Yuan, A. H. Keeble, R. G. Hibbert, S. Fabiane, H. J. Gould, J. M. Mcdonnell, A. J. Beavil, B. J. Sutton, B. Dhaliwal
Ca2+-Dependent Structural Changes In The B-Cell Receptor Cd23 Increase Its Affinity For Human Immunoglobulin E.
J. Biol. Chem. V. 288 21667 2013
[
close entry info
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Hetero Components
(2, 37)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
12
Ligand/Ion
GLYCEROL
2
SO4
25
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:263 , GLY A:264 , SER A:265
BINDING SITE FOR RESIDUE GOL A 301
02
AC2
SOFTWARE
LYS A:179 , SER A:215 , HIS A:216
BINDING SITE FOR RESIDUE GOL A 302
03
AC3
SOFTWARE
THR A:181 , GLN A:183 , HIS A:186 , LYS A:276
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
ARG A:172 , LYS A:173 , HIS A:202 , GLU A:206 , HOH A:425
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
ASN A:225 , LEU A:228 , ARG A:253 , GLN A:255 , GLY A:256 , ASP A:258 , HOH A:435 , ARG B:224
BINDING SITE FOR RESIDUE SO4 A 305
06
AC6
SOFTWARE
HIS A:186 , ARG B:172 , LEU B:285 , HOH B:458
BINDING SITE FOR RESIDUE GOL B 301
07
AC7
SOFTWARE
ARG A:224 , LEU A:226 , ARG B:188 , ASP B:192 , GLN B:197 , VAL B:235 , HOH B:423 , HOH B:435
BINDING SITE FOR RESIDUE SO4 B 302
08
AC8
SOFTWARE
ARG B:172 , LYS B:173 , HIS B:202 , GLU B:206 , HOH B:477
BINDING SITE FOR RESIDUE SO4 B 303
09
AC9
SOFTWARE
ARG B:263 , ASN B:269 , ARG B:275 , HOH B:461 , HIS E:216
BINDING SITE FOR RESIDUE SO4 B 304
10
BC1
SOFTWARE
ARG B:263 , SER B:265 , ARG B:267 , HOH B:452 , SER E:215 , HIS E:216 , THR E:217
BINDING SITE FOR RESIDUE SO4 B 305
11
BC2
SOFTWARE
LYS B:229 , GLU B:231 , ILE B:233 , HIS B:239 , ASN D:225 , ARG D:253 , GLN D:255 , GLY D:256 , ASP D:258 , HOH D:455
BINDING SITE FOR RESIDUE SO4 B 306
12
BC3
SOFTWARE
CYS C:163 , ILE C:168 , ASN C:169 , HOH C:476
BINDING SITE FOR RESIDUE GOL C 301
13
BC4
SOFTWARE
ARG C:263 , GLY C:264 , SER C:265 , ARG C:267 , HOH C:462
BINDING SITE FOR RESIDUE GOL C 302
14
BC5
SOFTWARE
ASN C:225 , LEU C:228 , ARG C:253 , GLY C:256 , ASP C:258 , HOH C:415 , HOH C:425 , HOH C:441 , HOH C:461 , ARG E:224
BINDING SITE FOR RESIDUE SO4 C 303
15
BC6
SOFTWARE
ARG C:172 , LYS C:173 , HIS C:202 , GLU C:206 , HOH C:418
BINDING SITE FOR RESIDUE SO4 C 304
16
BC7
SOFTWARE
ARG C:284 , HOH C:416 , HOH C:464 , ARG D:267
BINDING SITE FOR RESIDUE SO4 C 305
17
BC8
SOFTWARE
GLN C:183 , HIS C:186 , LYS C:276
BINDING SITE FOR RESIDUE SO4 C 306
18
BC9
SOFTWARE
ARG D:263 , GLY D:264 , SER D:265
BINDING SITE FOR RESIDUE GOL D 301
19
CC1
SOFTWARE
GLU D:257 , ASN D:269 , ALA D:270 , ARG D:275 , HOH D:460
BINDING SITE FOR RESIDUE GOL D 302
20
CC2
SOFTWARE
ARG D:188 , ARG D:224 , HOH D:445
BINDING SITE FOR RESIDUE SO4 D 303
21
CC3
SOFTWARE
ARG D:188 , ASP D:192 , GLN D:197 , HOH D:419 , ARG F:172
BINDING SITE FOR RESIDUE SO4 D 304
22
CC4
SOFTWARE
HIS C:186 , ARG E:172 , LEU E:285
BINDING SITE FOR RESIDUE SO4 E 301
23
CC5
SOFTWARE
ASN E:225 , ASP E:227 , ARG E:253 , GLN E:255 , GLY E:256 , ASP E:258
BINDING SITE FOR RESIDUE GOL E 302
24
CC6
SOFTWARE
ARG E:172 , LYS E:173 , HIS E:202 , GLU E:206 , HOH E:449
BINDING SITE FOR RESIDUE SO4 E 303
25
CC7
SOFTWARE
ARG E:263 , SER E:265 , ARG E:267 , HOH E:423
BINDING SITE FOR RESIDUE SO4 E 304
26
CC8
SOFTWARE
ARG C:224 , LEU C:226 , ARG E:188 , ASP E:192 , GLN E:197 , VAL E:235 , HOH E:420 , HOH E:455
BINDING SITE FOR RESIDUE SO4 E 305
27
CC9
SOFTWARE
PRO C:247 , ASP D:193 , VAL F:159 , THR F:289 , PRO F:290
BINDING SITE FOR RESIDUE GOL F 301
28
DC1
SOFTWARE
ARG F:263 , GLY F:264 , SER F:265
BINDING SITE FOR RESIDUE GOL F 302
29
DC2
SOFTWARE
ARG C:275 , ARG F:275 , LYS F:276
BINDING SITE FOR RESIDUE GOL F 303
30
DC3
SOFTWARE
LYS E:229 , GLU E:231 , HIS E:239 , ASN F:225 , ARG F:253 , GLN F:255 , GLY F:256 , ASP F:258 , HOH F:429
BINDING SITE FOR RESIDUE SO4 F 304
31
DC4
SOFTWARE
ARG D:172 , ARG F:188 , ASP F:192 , GLN F:197 , VAL F:235 , HOH F:420 , HOH F:431
BINDING SITE FOR RESIDUE SO4 F 305
32
DC5
SOFTWARE
ARG A:284 , ARG F:267
BINDING SITE FOR RESIDUE SO4 F 306
33
DC6
SOFTWARE
LYS F:182 , GLN F:183 , HIS F:186 , LYS F:276 , HOH F:463
BINDING SITE FOR RESIDUE SO4 F 307
34
DC7
SOFTWARE
LYS B:166 , LYS F:179 , HIS F:216 , HOH F:451
BINDING SITE FOR RESIDUE SO4 F 308
35
DC8
SOFTWARE
GLU A:195 , ARG F:267 , HOH F:417 , HOH F:457
BINDING SITE FOR RESIDUE SO4 F 309
36
DC9
SOFTWARE
ARG G:188 , ARG G:224 , LEU G:226 , ASP G:227
BINDING SITE FOR RESIDUE GOL G 301
37
EC1
SOFTWARE
LEU G:228 , ARG G:253 , GLN G:255 , GLY G:256 , ASP G:258
BINDING SITE FOR RESIDUE SO4 G 302
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 7)
Info
All SCOP Domains
1a: SCOP_d4gk1a_ (A:)
1b: SCOP_d4gk1b_ (B:)
1c: SCOP_d4gk1c_ (C:)
1d: SCOP_d4gk1d_ (D:)
1e: SCOP_d4gk1e_ (E:)
1f: SCOP_d4gk1f_ (F:)
1g: SCOP_d4gk1g_ (G:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Human (Homo sapiens) [TaxId: 9606]
(60)
1a
d4gk1a_
A:
1b
d4gk1b_
B:
1c
d4gk1c_
C:
1d
d4gk1d_
D:
1e
d4gk1e_
E:
1f
d4gk1f_
F:
1g
d4gk1g_
G:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
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Sidechain
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Ligand
Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Asymmetric Unit 1
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Asym.Unit (342 KB)
Header - Asym.Unit
Biol.Unit 1 (51 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (51 KB)
Header - Biol.Unit 3
Biol.Unit 4 (50 KB)
Header - Biol.Unit 4
Biol.Unit 5 (51 KB)
Header - Biol.Unit 5
Biol.Unit 6 (51 KB)
Header - Biol.Unit 6
Biol.Unit 7 (49 KB)
Header - Biol.Unit 7
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