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4GJG
Biol. Unit 1
Info
Asym.Unit (38 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF HUMAN CARDIAC TROPONIN C MUTANT D2N/V28I/L29Q/G30D (NIQD) IN COMPLEX WITH CADMIUM.
Authors
:
X. Zhang, M. Paetzel
Date
:
09 Aug 12 (Deposition) - 06 Feb 13 (Release) - 22 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Helix-Loop-Helix Ef-Hand Motif, Contractile Protein, Calcium Sensor, Cadmium Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
X. L. Zhang, G. F. Tibbits, M. Paetzel
The Structure Of Cardiac Troponin C Regulatory Domain With Bound Cd(2+) Reveals A Closed Conformation And Unique Ion Coordination.
Acta Crystallogr. , Sect. D V. 69 722 2013
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: CADMIUM ION (CDa)
3b: CADMIUM ION (CDb)
3c: CADMIUM ION (CDc)
3d: CADMIUM ION (CDd)
3e: CADMIUM ION (CDe)
3f: CADMIUM ION (CDf)
3g: CADMIUM ION (CDg)
4a: GLYCEROL (GOLa)
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No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CD
-1
Ligand/Ion
CADMIUM ION
4
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:27 , GLU A:40 , GLU A:63 , HOH A:201 , HOH A:202
BINDING SITE FOR RESIDUE CD A 101
02
AC2
SOFTWARE
GLU A:56 , CYS A:84 , ASP A:87 , SER A:89 , CD A:103
BINDING SITE FOR RESIDUE CD A 102
03
AC3
SOFTWARE
GLN A:50 , CYS A:84 , ASP A:87 , ASP A:88 , SER A:89 , CD A:102
BINDING SITE FOR RESIDUE CD A 103
04
AC4
SOFTWARE
ASP A:33 , CYS A:35 , ACT A:111 , HOH A:203
BINDING SITE FOR RESIDUE CD A 104
05
AC5
SOFTWARE
CYS A:35 , GLU A:66 , ASP A:73 , ASP A:75
BINDING SITE FOR RESIDUE CD A 105
06
AC6
SOFTWARE
MET A:1 , GLU A:59 , HOH A:206
BINDING SITE FOR RESIDUE CD A 106
07
AC7
SOFTWARE
ASP A:65 , THR A:71 , GLU A:76 , HOH A:209 , HOH A:210 , HOH A:211
BINDING SITE FOR RESIDUE CD A 107
08
AC8
SOFTWARE
GLU A:10 , GLU A:15 , GLU A:19
BINDING SITE FOR RESIDUE CA A 108
09
AC9
SOFTWARE
GLU A:15 , GLU A:19
BINDING SITE FOR RESIDUE CA A 110
10
BC1
SOFTWARE
MET A:1 , ASP A:33 , CYS A:35 , ILE A:36 , SER A:37 , THR A:71 , CD A:104 , HOH A:201 , HOH A:208
BINDING SITE FOR RESIDUE ACT A 111
11
BC2
SOFTWARE
LYS A:17 , GLU A:32
BINDING SITE FOR RESIDUE GOL A 112
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4gjga_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Troponin C
(53)
Human (Homo sapiens), cardiac isoform [TaxId: 9606]
(16)
1a
d4gjga_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (38 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (62 KB)
Header - Biol.Unit 2
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