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4GHH
Asym. Unit
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Asym.Unit (556 KB)
Biol.Unit 1 (549 KB)
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(1)
Title
:
STRUCTURE OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM B.FUSCUM IN COMPLEX WITH 4-NITROCATECHOL AT 1.55 ANG RESOLUTION
Authors
:
E. G. Kovaleva, J. D. Lipscomb
Date
:
07 Aug 12 (Deposition) - 31 Oct 12 (Release) - 12 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dioxygenase, Oxygen Activation, Fe(Ii), 2-His-1-Carboxylate Facial Triad, Homoprotocatechuate, 4-Nitrocatechol, Oxy Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. G. Kovaleva, J. D. Lipscomb
Structural Basis For The Role Of Tyrosine 257 Of Homoprotocatechuate 2, 3-Dioxygenase In Substrate And Oxygen Activation.
Biochemistry V. 51 8755 2012
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Hetero Components
(7, 18)
Info
All Hetero Components
1a: 4-NITROCATECHOL (4NCa)
1b: 4-NITROCATECHOL (4NCb)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: FE (II) ION (FE2a)
4b: FE (II) ION (FE2b)
4c: FE (II) ION (FE2c)
4d: FE (II) ION (FE2d)
5a: HEXAETHYLENE GLYCOL (P6Ga)
5b: HEXAETHYLENE GLYCOL (P6Gb)
5c: HEXAETHYLENE GLYCOL (P6Gc)
5d: HEXAETHYLENE GLYCOL (P6Gd)
5e: HEXAETHYLENE GLYCOL (P6Ge)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
7a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4NC
2
Ligand/Ion
4-NITROCATECHOL
2
CA
1
Ligand/Ion
CALCIUM ION
3
CL
4
Ligand/Ion
CHLORIDE ION
4
FE2
4
Ligand/Ion
FE (II) ION
5
P6G
5
Ligand/Ion
HEXAETHYLENE GLYCOL
6
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:155 , HIS A:214 , GLU A:267 , HOH A:859 , HOH A:872 , HOH A:873
BINDING SITE FOR RESIDUE FE2 A 401
02
AC2
SOFTWARE
GLU A:22 , VAL A:24 , LYS A:68 , LYS A:75 , ARG A:104 , PHE A:108 , ASP A:315 , GLY A:316 , HOH A:809
BINDING SITE FOR RESIDUE P6G A 402
03
AC3
SOFTWARE
ARG A:243 , HIS A:248 , ARG A:293 , HOH A:875
BINDING SITE FOR RESIDUE CL A 403
04
AC4
SOFTWARE
HIS B:155 , HIS B:214 , GLU B:267 , HOH B:841 , HOH B:842 , HOH B:843
BINDING SITE FOR RESIDUE FE2 B 401
05
AC5
SOFTWARE
ASP A:184 , GLU A:185 , HOH A:629 , ASP B:184 , GLU B:185 , HOH B:501
BINDING SITE FOR RESIDUE CA B 402
06
AC6
SOFTWARE
GLU B:22 , LYS B:68 , LYS B:75 , ARG B:104 , PHE B:108 , ASP B:315 , GLY B:316 , HOH B:746
BINDING SITE FOR RESIDUE P6G B 403
07
AC7
SOFTWARE
ASP A:183 , THR A:284 , ALA A:344 , GLY A:345 , HOH A:656 , ASP B:183 , ALA B:344 , GLY B:345 , HOH B:565 , HOH B:754 , HOH B:846 , HOH B:913
BINDING SITE FOR RESIDUE P6G B 404
08
AC8
SOFTWARE
ARG B:243 , HIS B:248 , ARG B:293
BINDING SITE FOR RESIDUE CL B 405
09
AC9
SOFTWARE
ALA B:12 , ASP B:172 , GLY B:174 , ARG B:195 , HOH B:575 , HOH B:861 , HOH B:871
BINDING SITE FOR RESIDUE PG4 B 406
10
BC1
SOFTWARE
HIS C:155 , HIS C:214 , GLU C:267 , 4NC C:403 , HOH C:869
BINDING SITE FOR RESIDUE FE2 C 401
11
BC2
SOFTWARE
GLU C:22 , LYS C:68 , LYS C:75 , ARG C:104 , PHE C:108 , ASP C:315 , GLY C:316 , HOH C:700 , HOH C:809
BINDING SITE FOR RESIDUE P6G C 402
12
BC3
SOFTWARE
HIS C:155 , TRP C:192 , HIS C:200 , HIS C:214 , ARG C:243 , HIS C:248 , VAL C:250 , SER C:251 , TYR C:257 , GLU C:267 , TYR C:269 , ARG C:292 , ARG C:293 , FE2 C:401 , CL C:405 , HOH C:869
BINDING SITE FOR RESIDUE 4NC C 403
13
BC4
SOFTWARE
ALA C:12 , ASP C:172 , GLY C:174 , ARG C:195 , HOH C:803 , HOH C:874
BINDING SITE FOR RESIDUE PEG C 404
14
BC5
SOFTWARE
ARG C:243 , HIS C:248 , ARG C:293 , 4NC C:403
BINDING SITE FOR RESIDUE CL C 405
15
BC6
SOFTWARE
HIS D:155 , HIS D:214 , GLU D:267 , 4NC D:403 , HOH D:900 , HOH D:915 , HOH D:916
BINDING SITE FOR RESIDUE FE2 D 401
16
BC7
SOFTWARE
GLU D:22 , THR D:67 , LYS D:68 , LYS D:75 , ARG D:104 , PHE D:108 , ASP D:315 , GLY D:316 , HOH D:720 , HOH D:784
BINDING SITE FOR RESIDUE P6G D 402
17
BC8
SOFTWARE
HIS D:155 , TRP D:192 , HIS D:200 , HIS D:214 , ARG D:243 , HIS D:248 , VAL D:250 , SER D:251 , TYR D:257 , GLU D:267 , TYR D:269 , ARG D:292 , ARG D:293 , FE2 D:401 , CL D:404 , HOH D:900 , HOH D:915 , HOH D:916 , HOH D:917
BINDING SITE FOR RESIDUE 4NC D 403
18
BC9
SOFTWARE
ARG D:243 , HIS D:248 , ARG D:293 , 4NC D:403
BINDING SITE FOR RESIDUE CL D 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d4ghha1 (A:3-147)
1b: SCOP_d4ghhb1 (B:3-147)
1c: SCOP_d4ghhb2 (B:148-362)
1d: SCOP_d4ghhc1 (C:3-147)
1e: SCOP_d4ghhc2 (C:148-357)
1f: SCOP_d4ghhd1 (D:4-147)
1g: SCOP_d4ghhd2 (D:148-362)
1h: SCOP_d4ghha2 (A:148-358)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
Extradiol dioxygenases
(43)
Protein domain
:
Homoprotocatechuate 2,3-dioxygenase
(17)
Brevibacterium fuscum [TaxId: 47914]
(14)
1a
d4ghha1
A:3-147
1b
d4ghhb1
B:3-147
1c
d4ghhb2
B:148-362
1d
d4ghhc1
C:3-147
1e
d4ghhc2
C:148-357
1f
d4ghhd1
D:4-147
1g
d4ghhd2
D:148-362
1h
d4ghha2
A:148-358
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (556 KB)
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