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4GGH
Biol. Unit 1
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Asym.Unit (568 KB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ENOLASE FAMILY MEMBER FROM VIBRIO HARVEYI (EFI-TARGET 501692) WITH HOMOLOGY TO MANNONATE DEHYDRATASE, WITH MG, HEPES, AND ETHYLENE GLYCOL BOUND (ORDERED LOOPS, SPACE GROUP C2221)
Authors
:
M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wa S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, J. A. Gerlt, S. C. Almo, Function Initiative (Efi)
Date
:
06 Aug 12 (Deposition) - 05 Sep 12 (Release) - 05 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (2x)
Keywords
:
Enolase, Putative Mannonate Dehydratase, Enzyme Function Initiative, Efi, Structural Genomics, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) With Homology To Mannonate Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound (Ordered Loops, Space Group C2221)
To Be Published
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Hetero Components
(3, 42)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
3d: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEd)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
30
Ligand/Ion
1,2-ETHANEDIOL
3
EPE
8
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
GOL
4
Ligand/Ion
GLYCEROL
5
MG
-1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:247 , ASN B:247 , ASN C:247 , ASN D:247 , HOH D:501 , HOH D:502
BINDING SITE FOR RESIDUE MG A 401
02
AC2
SOFTWARE
ASP A:205 , GLU A:231 , GLU A:257 , HOH A:501 , HOH A:502 , HOH A:925
BINDING SITE FOR RESIDUE MG A 402
03
AC3
SOFTWARE
ARG A:18 , HIS A:19 , GLN A:41 , ARG A:382 , HIS A:384 , TRP A:386 , HOH A:651 , HOH A:762 , HOH A:765 , HOH A:815
BINDING SITE FOR RESIDUE EPE A 403
04
AC4
SOFTWARE
ARG A:118 , ASP A:119 , ASP C:69 , HOH C:862 , THR D:171 , GLY D:394
BINDING SITE FOR RESIDUE EDO A 404
05
AC5
SOFTWARE
PRO A:170 , GLN A:172 , GLY A:173 , TYR A:175
BINDING SITE FOR RESIDUE EDO A 405
06
AC6
SOFTWARE
GLN A:224 , ASN A:226 , SER A:250 , HOH A:677 , GLN D:221
BINDING SITE FOR RESIDUE EDO A 406
07
AC7
SOFTWARE
GLN A:41 , GLN A:42 , TRP A:80 , HIS A:307 , PRO A:309 , ASP A:311 , HOH A:921
BINDING SITE FOR RESIDUE EDO A 407
08
AC8
SOFTWARE
PRO A:383 , HIS A:384 , GLU A:385 , HOH A:615
BINDING SITE FOR RESIDUE CL A 408
09
AC9
SOFTWARE
ASP B:205 , GLU B:231 , GLU B:257 , HOH B:501 , HOH B:502 , HOH B:906
BINDING SITE FOR RESIDUE MG B 401
10
BC1
SOFTWARE
ARG B:18 , HIS B:19 , GLN B:41 , ARG B:209 , ARG B:382 , HIS B:384 , TRP B:386 , HOH B:725 , HOH B:734 , HOH B:803 , HOH B:809
BINDING SITE FOR RESIDUE EPE B 402
11
BC2
SOFTWARE
ASN B:226 , SER B:250 , HOH B:632 , GLN C:221
BINDING SITE FOR RESIDUE EDO B 403
12
BC3
SOFTWARE
ASP B:69 , THR B:171 , ARG B:390 , GLY B:394 , HOH B:692 , ARG D:118 , ASP D:119
BINDING SITE FOR RESIDUE EDO B 404
13
BC4
SOFTWARE
GLN B:41 , GLN B:42 , TYR B:79 , TRP B:80 , HIS B:307 , PRO B:309 , ASP B:311 , HOH B:802
BINDING SITE FOR RESIDUE EDO B 405
14
BC5
SOFTWARE
LYS B:198 , PHE B:200
BINDING SITE FOR RESIDUE EDO B 406
15
BC6
SOFTWARE
ASP C:205 , GLU C:231 , GLU C:257 , HOH C:501 , HOH C:502 , HOH C:925
BINDING SITE FOR RESIDUE MG C 401
16
BC7
SOFTWARE
GLN C:41 , GLN C:42 , HIS C:207 , GLU C:257 , HIS C:307 , PRO C:309 , ASP C:311 , TYR D:79 , TRP D:80
BINDING SITE FOR RESIDUE GOL C 402
17
BC8
SOFTWARE
ARG C:18 , HIS C:19 , GLN C:41 , ARG C:209 , ARG C:382 , HIS C:384 , TRP C:386 , HOH C:678 , HOH C:734 , HOH C:814
BINDING SITE FOR RESIDUE EPE C 403
18
BC9
SOFTWARE
PRO B:227 , PHE B:228 , ASN C:213 , GLN C:214 , GLN C:217 , HOH C:552 , HOH C:579 , HOH C:788
BINDING SITE FOR RESIDUE EDO C 404
19
CC1
SOFTWARE
ARG B:118 , ASP B:119 , THR C:171 , ARG C:390 , GLY C:394 , ASP D:69 , HOH D:655
BINDING SITE FOR RESIDUE EDO C 405
20
CC2
SOFTWARE
GLN A:221 , GLU C:223 , GLN C:224 , ASN C:226 , SER C:250 , HOH C:849 , HOH C:863 , HOH C:875
BINDING SITE FOR RESIDUE EDO C 406
21
CC3
SOFTWARE
PRO C:161 , GLN C:172 , GLY C:173
BINDING SITE FOR RESIDUE EDO C 407
22
CC4
SOFTWARE
ASN C:82 , GLY C:83 , PRO C:84 , VAL C:85 , ILE C:86 , ASN D:82 , GLY D:83 , PRO D:84 , VAL D:85 , ILE D:86
BINDING SITE FOR RESIDUE CL C 408
23
CC5
SOFTWARE
PRO C:383 , HIS C:384 , GLU C:385 , HOH C:683
BINDING SITE FOR RESIDUE CL C 409
24
CC6
SOFTWARE
LEU A:391 , PRO A:392 , ASP A:393 , HOH C:720
BINDING SITE FOR RESIDUE CL C 410
25
CC7
SOFTWARE
ASP D:205 , GLU D:231 , GLU D:257 , HOH D:503 , HOH D:504 , HOH D:928
BINDING SITE FOR RESIDUE MG D 401
26
CC8
SOFTWARE
TRP C:80 , GLN D:41 , GLN D:42 , HIS D:207 , GLU D:257 , HIS D:307 , PRO D:309 , ASP D:311
BINDING SITE FOR RESIDUE GOL D 402
27
CC9
SOFTWARE
ARG D:18 , HIS D:19 , GLN D:41 , ARG D:209 , ARG D:382 , HIS D:384 , TRP D:386 , HOH D:623 , HOH D:657 , HOH D:857
BINDING SITE FOR RESIDUE EPE D 403
28
DC1
SOFTWARE
ASN B:213 , GLN B:214 , GLN B:217 , HOH B:508 , HOH B:529 , HOH B:756 , PRO D:227
BINDING SITE FOR RESIDUE EDO D 404
29
DC2
SOFTWARE
PRO D:170 , THR D:171 , GLN D:172 , GLY D:173 , TYR D:175
BINDING SITE FOR RESIDUE EDO D 405
30
DC3
SOFTWARE
PRO A:227 , PHE A:228 , ASN D:213 , GLN D:214 , GLN D:217 , HOH D:620 , HOH D:680
BINDING SITE FOR RESIDUE EDO D 406
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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