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4GDJ
Asym. Unit
Info
Asym.Unit (650 KB)
Biol.Unit 1 (164 KB)
Biol.Unit 2 (167 KB)
Biol.Unit 3 (163 KB)
Biol.Unit 4 (162 KB)
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(1)
Title
:
A SUBTYPE N10 NEURAMINIDASE-LIKE PROTEIN OF A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/060/2010
Authors
:
X. Zhu, I. A. Wilson
Date
:
31 Jul 12 (Deposition) - 26 Sep 12 (Release) - 28 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Influenza Virus, Neuraminidase-Like, N10, Beta Propeller, Ectodomain, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, H. Yang, Z. Guo, W. Yu, P. J. Carney, Y. Li, L. M. Chen, J. C. Paulson, R. O. Donis, S. Tong, J. Stevens, I. A. Wilson
Crystal Structures Of Two Subtype N10 Neuraminidase-Like Proteins From Bat Influenza A Viruses Reveal A Diverged Putative Active Site.
Proc. Natl. Acad. Sci. Usa V. 109 18903 2012
[
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Hetero Components
(4, 26)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
3a: BETA-L-FUCOSE (FULa)
3b: BETA-L-FUCOSE (FULb)
3c: BETA-L-FUCOSE (FULc)
3d: BETA-L-FUCOSE (FULd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
3
FUL
4
Ligand/Ion
BETA-L-FUCOSE
4
NAG
14
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:269 , THR A:271 , NAG A:502 , FUC A:503 , FUL A:504 , HOH A:644
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
NAG A:501 , HOH A:644 , HOH A:697 , ASN B:401
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
ILE A:314 , NAG A:501 , HOH A:643 , HOH A:774
BINDING SITE FOR RESIDUE FUC A 503
04
AC4
SOFTWARE
NAG A:501 , HOH A:644 , HOH A:696 , HOH A:754 , GLU C:387 , THR C:390
BINDING SITE FOR RESIDUE FUL A 504
05
AC5
SOFTWARE
GLN A:258 , ASN A:259
BINDING SITE FOR RESIDUE NAG A 505
06
AC6
SOFTWARE
ASN A:248
BINDING SITE FOR RESIDUE NAG A 506
07
AC7
SOFTWARE
ASN A:293 , ASP A:297 , ASP A:324 , GLY A:345 , GLY A:347 , HOH A:601
BINDING SITE FOR RESIDUE CA A 507
08
AC8
SOFTWARE
ASN B:269 , THR B:271 , NAG B:502 , FUC B:503 , FUL B:504 , HOH B:656 , HOH B:711
BINDING SITE FOR RESIDUE NAG B 501
09
AC9
SOFTWARE
NAG B:501 , FUL B:504 , HOH B:694 , ASN D:401
BINDING SITE FOR RESIDUE NAG B 502
10
BC1
SOFTWARE
ILE B:314 , NAG B:501 , HOH B:740 , HOH B:762
BINDING SITE FOR RESIDUE FUC B 503
11
BC2
SOFTWARE
GLU A:387 , THR A:390 , HOH A:785 , NAG B:501 , NAG B:502 , HOH B:656 , HOH B:697
BINDING SITE FOR RESIDUE FUL B 504
12
BC3
SOFTWARE
GLN B:258 , ASN B:259 , GLN B:263 , HOH B:713
BINDING SITE FOR RESIDUE NAG B 505
13
BC4
SOFTWARE
ASN B:248
BINDING SITE FOR RESIDUE NAG B 506
14
BC5
SOFTWARE
ASN B:293 , ASP B:297 , ASP B:324 , GLY B:345 , GLY B:347 , HOH B:716
BINDING SITE FOR RESIDUE CA B 507
15
BC6
SOFTWARE
ASN C:269 , NAG C:502 , FUC C:503 , FUL C:504 , HOH C:653 , HOH C:737 , GLN D:267 , LEU D:268
BINDING SITE FOR RESIDUE NAG C 501
16
BC7
SOFTWARE
NAG C:501 , FUL C:504
BINDING SITE FOR RESIDUE NAG C 502
17
BC8
SOFTWARE
ASN C:269 , ILE C:314 , NAG C:501 , HOH C:620
BINDING SITE FOR RESIDUE FUC C 503
18
BC9
SOFTWARE
NAG C:501 , NAG C:502 , HOH C:658 , HOH C:664 , HOH C:700 , ARG D:219 , GLN D:249 , VAL D:251 , GLN D:267
BINDING SITE FOR RESIDUE FUL C 504
19
CC1
SOFTWARE
ASN C:248
BINDING SITE FOR RESIDUE NAG C 505
20
CC2
SOFTWARE
ASN C:293 , ASP C:297 , ASP C:324 , GLY C:345 , GLY C:347 , HOH C:601
BINDING SITE FOR RESIDUE CA C 506
21
CC3
SOFTWARE
ARG C:219 , ASN D:269 , NAG D:502 , FUC D:503 , FUL D:504 , HOH D:718
BINDING SITE FOR RESIDUE NAG D 501
22
CC4
SOFTWARE
NAG D:501 , FUL D:504 , HOH D:718
BINDING SITE FOR RESIDUE NAG D 502
23
CC5
SOFTWARE
ILE D:314 , NAG D:501 , HOH D:674
BINDING SITE FOR RESIDUE FUC D 503
24
CC6
SOFTWARE
ARG C:219 , ASN C:248 , GLN C:249 , NAG D:501 , NAG D:502 , HOH D:718
BINDING SITE FOR RESIDUE FUL D 504
25
CC7
SOFTWARE
ASN D:248 , HOH D:711 , HOH D:734 , HOH D:754
BINDING SITE FOR RESIDUE NAG D 505
26
CC8
SOFTWARE
ASN D:293 , ASP D:297 , ASP D:324 , GLY D:345 , GLY D:347 , HOH D:601
BINDING SITE FOR RESIDUE CA D 506
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4gdja_ (A:)
1b: SCOP_d4gdjb_ (B:)
1c: SCOP_d4gdjc_ (C:)
1d: SCOP_d4gdjd_ (D:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza A virus [TaxId: 11320]
(31)
1a
d4gdja_
A:
1b
d4gdjb_
B:
1c
d4gdjc_
C:
1d
d4gdjd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (650 KB)
Header - Asym.Unit
Biol.Unit 1 (164 KB)
Header - Biol.Unit 1
Biol.Unit 2 (167 KB)
Header - Biol.Unit 2
Biol.Unit 3 (163 KB)
Header - Biol.Unit 3
Biol.Unit 4 (162 KB)
Header - Biol.Unit 4
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