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4GDJ
Biol. Unit 2
Info
Asym.Unit (650 KB)
Biol.Unit 1 (164 KB)
Biol.Unit 2 (167 KB)
Biol.Unit 3 (163 KB)
Biol.Unit 4 (162 KB)
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(1)
Title
:
A SUBTYPE N10 NEURAMINIDASE-LIKE PROTEIN OF A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/060/2010
Authors
:
X. Zhu, I. A. Wilson
Date
:
31 Jul 12 (Deposition) - 26 Sep 12 (Release) - 28 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Influenza Virus, Neuraminidase-Like, N10, Beta Propeller, Ectodomain, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, H. Yang, Z. Guo, W. Yu, P. J. Carney, Y. Li, L. M. Chen, J. C. Paulson, R. O. Donis, S. Tong, J. Stevens, I. A. Wilson
Crystal Structures Of Two Subtype N10 Neuraminidase-Like Proteins From Bat Influenza A Viruses Reveal A Diverged Putative Active Site.
Proc. Natl. Acad. Sci. Usa V. 109 18903 2012
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
3a: BETA-L-FUCOSE (FULa)
3b: BETA-L-FUCOSE (FULb)
3c: BETA-L-FUCOSE (FULc)
3d: BETA-L-FUCOSE (FULd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
FUL
1
Ligand/Ion
BETA-L-FUCOSE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(8, 8)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
7: BC4 (SOFTWARE)
8: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
NAG A:501 , HOH A:644 , HOH A:697 , ASN B:401
BINDING SITE FOR RESIDUE NAG A 502
2
AC8
SOFTWARE
ASN B:269 , THR B:271 , NAG B:502 , FUC B:503 , FUL B:504 , HOH B:656 , HOH B:711
BINDING SITE FOR RESIDUE NAG B 501
3
AC9
SOFTWARE
NAG B:501 , FUL B:504 , HOH B:694 , ASN D:401
BINDING SITE FOR RESIDUE NAG B 502
4
BC1
SOFTWARE
ILE B:314 , NAG B:501 , HOH B:740 , HOH B:762
BINDING SITE FOR RESIDUE FUC B 503
5
BC2
SOFTWARE
GLU A:387 , THR A:390 , HOH A:785 , NAG B:501 , NAG B:502 , HOH B:656 , HOH B:697
BINDING SITE FOR RESIDUE FUL B 504
6
BC3
SOFTWARE
GLN B:258 , ASN B:259 , GLN B:263 , HOH B:713
BINDING SITE FOR RESIDUE NAG B 505
7
BC4
SOFTWARE
ASN B:248
BINDING SITE FOR RESIDUE NAG B 506
8
BC5
SOFTWARE
ASN B:293 , ASP B:297 , ASP B:324 , GLY B:345 , GLY B:347 , HOH B:716
BINDING SITE FOR RESIDUE CA B 507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4gdja_ (A:)
1b: SCOP_d4gdjb_ (B:)
1c: SCOP_d4gdjc_ (C:)
1d: SCOP_d4gdjd_ (D:)
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza A virus [TaxId: 11320]
(31)
1a
d4gdja_
A:
1b
d4gdjb_
B:
1c
d4gdjc_
C:
1d
d4gdjd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (650 KB)
Header - Asym.Unit
Biol.Unit 1 (164 KB)
Header - Biol.Unit 1
Biol.Unit 2 (167 KB)
Header - Biol.Unit 2
Biol.Unit 3 (163 KB)
Header - Biol.Unit 3
Biol.Unit 4 (162 KB)
Header - Biol.Unit 4
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