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4G72
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
STRUCTURE OF RECOMBINANT CYTOCHROME BA3 OXIDASE MUTANT V236M FROM THERMUS THERMOPHILUS
Authors
:
Y. Li, Y. Chen, C. D. Stout
Date
:
19 Jul 12 (Deposition) - 24 Jul 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.19
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Oxidoreductase, Proton Pump
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Li, Y. Chen, C. D. Stout
Structure Of Recombinant Cytochrome Ba3 Oxidase Mutant V236 From Thermus Thermophilus
To Be Published
[
close entry info
]
Hetero Components
(6, 21)
Info
All Hetero Components
2a: DINUCLEAR COPPER ION (CUAa)
1a: COPPER (II) ION (CUa)
3a: HEME-AS (HASa)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5a: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCa)
5b: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCb)
5c: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCc)
5d: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCd)
5e: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCe)
5f: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCf)
5g: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCg)
5h: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCh)
5i: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCi)
5j: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCj)
5k: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCk)
5l: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCl)
5m: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCm)
5n: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCn)
5o: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCo)
5p: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCp)
6a: PEROXIDE ION (PERa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
1
Ligand/Ion
COPPER (II) ION
2
CUA
1
Ligand/Ion
DINUCLEAR COPPER ION
3
HAS
1
Ligand/Ion
HEME-AS
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
OLC
16
Ligand/Ion
(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
6
PER
1
Ligand/Ion
PEROXIDE ION
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:233 , HIS A:282 , HIS A:283 , HAS A:603 , PER A:604
BINDING SITE FOR RESIDUE CU A 601
02
AC2
SOFTWARE
LEU A:32 , GLY A:39 , PRO A:40 , GLN A:42 , ALA A:43 , TYR A:46 , TYR A:65 , LEU A:69 , HIS A:72 , ASN A:76 , ALA A:77 , LEU A:132 , TYR A:133 , PHE A:385 , HIS A:386 , ALA A:390 , THR A:394 , MET A:432 , MET A:435 , ARG A:449 , ARG A:450 , ALA A:451 , LEU A:477
BINDING SITE FOR RESIDUE HEM A 602
03
AC3
SOFTWARE
TYR A:133 , TRP A:229 , MET A:236 , TYR A:237 , TYR A:244 , HIS A:282 , HIS A:283 , SER A:309 , ALA A:313 , VAL A:350 , LEU A:353 , PHE A:356 , GLY A:363 , ASN A:366 , ALA A:367 , ASP A:372 , HIS A:376 , HIS A:384 , PHE A:385 , GLN A:388 , VAL A:389 , ARG A:449 , CU A:601 , PER A:604 , HOH A:701 , VAL C:11
BINDING SITE FOR RESIDUE HAS A 603
04
AC4
SOFTWARE
HIS A:233 , MET A:236 , HIS A:283 , CU A:601 , HAS A:603
BINDING SITE FOR RESIDUE PER A 604
05
AC5
SOFTWARE
LEU A:105 , VAL A:158 , TYR A:161 , ILE A:475 , VAL A:479 , OLC A:614
BINDING SITE FOR RESIDUE OLC A 605
06
AC6
SOFTWARE
PHE A:213 , LEU A:215 , TRP A:341 , TRP A:426 , OLC A:609 , OLC A:613 , OLC A:614 , OLC A:615
BINDING SITE FOR RESIDUE OLC A 606
07
AC7
SOFTWARE
TRP A:441 , LEU A:444 , TYR B:145 , HOH B:310 , ARG C:33
BINDING SITE FOR RESIDUE OLC A 607
08
AC8
SOFTWARE
THR A:293 , MET A:296 , ILE A:297 , HOH B:301
BINDING SITE FOR RESIDUE OLC A 608
09
AC9
SOFTWARE
TRP A:143 , SER A:212 , PHE A:213 , GLY A:214 , LEU A:430 , OLC A:606 , OLC A:616
BINDING SITE FOR RESIDUE OLC A 609
10
BC1
SOFTWARE
TRP A:111 , VAL A:465 , OLC A:613
BINDING SITE FOR RESIDUE OLC A 610
11
BC2
SOFTWARE
TYR A:161 , ARG A:168
BINDING SITE FOR RESIDUE OLC A 611
12
BC3
SOFTWARE
TRP A:167 , ARG A:168 , LYS A:171 , GLY A:528
BINDING SITE FOR RESIDUE OLC A 612
13
BC4
SOFTWARE
GLY A:104 , LEU A:108 , VAL A:468 , OLC A:606 , OLC A:610 , OLC A:614
BINDING SITE FOR RESIDUE OLC A 613
14
BC5
SOFTWARE
GLY A:104 , LEU A:105 , MET A:112 , VAL A:151 , OLC A:605 , OLC A:606 , OLC A:613
BINDING SITE FOR RESIDUE OLC A 614
15
BC6
SOFTWARE
ASP A:415 , ALA A:416 , ARG A:419 , OLC A:606
BINDING SITE FOR RESIDUE OLC A 615
16
BC7
SOFTWARE
ARG A:337 , TRP A:341 , PHE A:429 , LEU A:430 , OLC A:609
BINDING SITE FOR RESIDUE OLC A 616
17
BC8
SOFTWARE
HIS B:114 , CYS B:149 , GLN B:151 , CYS B:153 , HIS B:157 , MET B:160
BINDING SITE FOR RESIDUE CUA B 201
18
BC9
SOFTWARE
PHE B:21 , LEU B:32 , TYR B:35 , OLC B:203
BINDING SITE FOR RESIDUE OLC B 202
19
CC1
SOFTWARE
ALA B:13 , TYR B:14 , GLY B:17 , TRP B:18 , TYR B:35 , OLC B:202
BINDING SITE FOR RESIDUE OLC B 203
20
CC2
SOFTWARE
PHE C:22 , GLY C:25 , VAL C:29 , OLC C:102
BINDING SITE FOR RESIDUE OLC C 101
21
CC3
SOFTWARE
OLC C:101
BINDING SITE FOR RESIDUE OLC C 102
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d4g72b2 (B:37-168)
2a: SCOP_d4g72a_ (A:)
3a: SCOP_d4g72b1 (B:3-36)
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(
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(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Periplasmic domain of cytochrome c oxidase subunit II
(70)
Protein domain
:
Cytochrome c oxidase
(62)
Thermus thermophilus, ba3 type [TaxId: 274]
(28)
1a
d4g72b2
B:37-168
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Cytochrome c oxidase subunit I-like
(65)
Superfamily
:
Cytochrome c oxidase subunit I-like
(65)
Family
:
Cytochrome c oxidase subunit I-like
(65)
Protein domain
:
Bacterial ba3 type cytochrome c oxidase subunit I
(24)
Thermus thermophilus [TaxId: 274]
(24)
2a
d4g72a_
A:
Fold
:
Transmembrane helix hairpin
(84)
Superfamily
:
Cytochrome c oxidase subunit II-like, transmembrane region
(66)
Family
:
automated matches
(9)
Protein domain
:
automated matches
(9)
Thermus thermophilus HB8 [TaxId: 300852]
(8)
3a
d4g72b1
B:3-36
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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