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4G5F
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
PANTOTHENATE SYNTHETASE IN COMPLEX WITH RACEMATE (2S)-2,3-DIHYDRO-1,4-BENZODIOXINE-2-CARBOXYLIC ACID AND (2R)-2,3-DIHYDRO-1,4-BENZODIOXINE-2-CARBOXYLIC ACID
Authors
:
H. L. Silvestre, T. L. Blundell, C. Abell, A. Ciulli
Date
:
17 Jul 12 (Deposition) - 17 Jul 13 (Release) - 04 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Alpha Beta 3-Layer(Aba) Sandwich Rossmann Fold, Ligase, Atp Binding Pantoate Binding Beta-Alanine Binding, Ligase-Ligase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
H. L. Silvestre, T. L. Blundell, C. Abell, A. Ciulli
Integrated Biophysical Approach To Fragment Screening And Validation For Fragment-Based Lead Discovery.
Proc. Natl. Acad. Sci. Usa V. 110 12984 2013
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Hetero Components
(5, 11)
Info
All Hetero Components
1a: (2S)-2,3-DIHYDRO-1,4-BENZODIOXINE-... (0JDa)
1b: (2S)-2,3-DIHYDRO-1,4-BENZODIOXINE-... (0JDb)
2a: (2R)-2,3-DIHYDRO-1,4-BENZODIOXINE-... (15Na)
2b: (2R)-2,3-DIHYDRO-1,4-BENZODIOXINE-... (15Nb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
4a: ETHANOL (EOHa)
4b: ETHANOL (EOHb)
4c: ETHANOL (EOHc)
5a: GLYCEROL (GOLa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0JD
2
Ligand/Ion
(2S)-2,3-DIHYDRO-1,4-BENZODIOXINE-2-CARBOXYLIC ACID
2
15N
2
Ligand/Ion
(2R)-2,3-DIHYDRO-1,4-BENZODIOXINE-2-CARBOXYLIC ACID
3
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
4
EOH
3
Ligand/Ion
ETHANOL
5
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:109 , TYR A:110 , PRO A:111 , ASP A:112 , GLY A:113 , LEU A:114 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE GOL A 401
02
AC2
SOFTWARE
PRO A:38 , THR A:39 , MET A:40 , HIS A:47 , VAL A:143 , GLN A:164 , HOH A:558
BINDING SITE FOR RESIDUE 0JD A 402
03
AC3
SOFTWARE
PRO A:38 , THR A:39 , MET A:40 , HIS A:47 , VAL A:143 , GLN A:164 , HOH A:558
BINDING SITE FOR RESIDUE 15N A 403
04
AC4
SOFTWARE
PRO A:111 , ASP A:112
BINDING SITE FOR RESIDUE EDO A 404
05
AC5
SOFTWARE
LEU A:114 , ARG A:115 , THR A:117 , GLN B:119 , PRO B:120 , GLY B:121
BINDING SITE FOR RESIDUE EDO A 405
06
AC6
SOFTWARE
MET A:71 , TYR A:110
BINDING SITE FOR RESIDUE EOH A 406
07
AC7
SOFTWARE
SER B:24 , ARG B:25 , ARG B:28 , VAL B:150 , ARG B:151
BINDING SITE FOR RESIDUE EOH B 401
08
AC8
SOFTWARE
PRO B:38 , THR B:39 , MET B:40 , HIS B:47 , VAL B:143 , PHE B:157 , GLN B:164
BINDING SITE FOR RESIDUE 15N B 402
09
AC9
SOFTWARE
PRO A:133
BINDING SITE FOR RESIDUE EOH B 404
10
BC1
SOFTWARE
PRO B:38 , THR B:39 , MET B:40 , HIS B:47 , VAL B:143 , GLN B:164
BINDING SITE FOR RESIDUE 0JD B 403
11
BC2
SOFTWARE
TYR B:110 , LEU B:114 , GLY B:138
BINDING SITE FOR RESIDUE EDO B 405
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4g5fa_ (A:)
1b: SCOP_d4g5fb_ (B:)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d4g5fa_
A:
1b
d4g5fb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (94 KB)
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