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4FYQ
Biol. Unit 1
Info
Asym.Unit (171 KB)
Biol.Unit 1 (326 KB)
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(1)
Title
:
HUMAN AMINOPEPTIDASE N (CD13)
Authors
:
A. H. Wong, J. M. Rini
Date
:
05 Jul 12 (Deposition) - 05 Sep 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Metalloprotease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. H. Wong, D. Zhou, J. M. Rini
The X-Ray Crystal Structure Of Human Aminopeptidase N Reveals A Novel Dimer And The Basis For Peptide Processing.
J. Biol. Chem. V. 287 36804 2012
[
close entry info
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Hetero Components
(4, 46)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: BETA-D-MANNOSE (BMAa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
2
Ligand/Ion
ACETIC ACID
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
NAG
20
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
22
Ligand/Ion
SULFATE ION
5
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:128 , GLY A:184 , GLU A:185 , HOH A:1500 , HOH A:1584 , HOH A:1617
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
SER A:84 , TYR A:85 , ARG A:86 , ASN A:234 , THR A:271 , NAG A:1003 , HOH A:1632
BINDING SITE FOR RESIDUE NAG A 1002
03
AC3
SOFTWARE
ARG A:110 , NAG A:1002 , BMA A:1004
BINDING SITE FOR RESIDUE NAG A 1003
04
AC4
SOFTWARE
NAG A:1003
BINDING SITE FOR RESIDUE BMA A 1004
05
AC5
SOFTWARE
HIS A:239 , LYS A:241 , LEU A:243 , SER A:255 , PRO A:257 , ASN A:265 , HOH A:1254 , HOH A:1597
BINDING SITE FOR RESIDUE NAG A 1005
06
AC6
SOFTWARE
TYR A:316 , ASN A:319 , HOH A:1484
BINDING SITE FOR RESIDUE NAG A 1006
07
AC7
SOFTWARE
ASP A:433 , GLN A:596 , LEU A:624 , ASN A:625 , NAG A:1008 , HOH A:1452 , HOH A:1535 , HOH A:1658
BINDING SITE FOR RESIDUE NAG A 1007
08
AC8
SOFTWARE
NAG A:1007
BINDING SITE FOR RESIDUE NAG A 1008
09
AC9
SOFTWARE
GLU A:579 , THR A:677 , LEU A:678 , ASN A:681 , HOH A:1109 , HOH A:1763
BINDING SITE FOR RESIDUE NAG A 1009
10
BC1
SOFTWARE
GLN A:498 , SER A:502 , ALA A:524 , ASN A:527 , GLU A:781
BINDING SITE FOR RESIDUE NAG A 1010
11
BC2
SOFTWARE
ASN A:784 , ASN A:818 , THR A:820
BINDING SITE FOR RESIDUE NAG A 1011
12
BC3
SOFTWARE
HIS A:388 , HIS A:392 , GLU A:411 , ACY A:1024
BINDING SITE FOR RESIDUE ZN A 1012
13
BC4
SOFTWARE
GLY A:134 , HIS A:135 , ARG A:136 , LYS A:152 , THR A:153 , HOH A:1489
BINDING SITE FOR RESIDUE SO4 A 1013
14
BC5
SOFTWARE
ARG A:136 , THR A:153 , GLU A:154 , LEU A:155
BINDING SITE FOR RESIDUE SO4 A 1014
15
BC6
SOFTWARE
ARG A:690 , HOH A:1246 , HOH A:1328
BINDING SITE FOR RESIDUE SO4 A 1015
16
BC7
SOFTWARE
SER A:562 , ARG A:606 , HOH A:1154
BINDING SITE FOR RESIDUE SO4 A 1016
17
BC8
SOFTWARE
SER A:375 , SER A:377 , SER A:794 , LYS A:827 , HOH A:1128 , HOH A:1341 , HOH A:1638 , HOH A:1710
BINDING SITE FOR RESIDUE SO4 A 1017
18
BC9
SOFTWARE
ARG A:606 , GLN A:645 , ARG A:648
BINDING SITE FOR RESIDUE SO4 A 1018
19
CC1
SOFTWARE
ASN A:128 , TYR A:129 , ARG A:136 , LEU A:155 , HOH A:1584 , HOH A:1605
BINDING SITE FOR RESIDUE SO4 A 1019
20
CC2
SOFTWARE
TYR A:715 , LYS A:719 , GLU A:837 , TRP A:839 , HOH A:1184 , HOH A:1672 , HOH A:1701
BINDING SITE FOR RESIDUE SO4 A 1020
21
CC3
SOFTWARE
TYR A:198 , MET A:199 , ARG A:305 , ARG A:855 , HOH A:1612 , HOH A:1722
BINDING SITE FOR RESIDUE SO4 A 1021
22
CC4
SOFTWARE
SER A:651 , ARG A:658 , GLN A:691
BINDING SITE FOR RESIDUE SO4 A 1022
23
CC5
SOFTWARE
ARG A:537 , LYS A:967
BINDING SITE FOR RESIDUE SO4 A 1023
24
CC6
SOFTWARE
ALA A:353 , GLU A:355 , HIS A:388 , GLU A:389 , HIS A:392 , GLU A:411 , TYR A:477 , ZN A:1012
BINDING SITE FOR RESIDUE ACY A 1024
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Atom Selection
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Protein
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Protein & NOT Variant
Protein & NOT Site
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (171 KB)
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Header - Biol.Unit 1
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