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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
4FYQ
Asym. Unit
Info
Asym.Unit (171 KB)
Biol.Unit 1 (326 KB)
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(1)
Title
:
HUMAN AMINOPEPTIDASE N (CD13)
Authors
:
A. H. Wong, J. M. Rini
Date
:
05 Jul 12 (Deposition) - 05 Sep 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Metalloprotease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. H. Wong, D. Zhou, J. M. Rini
The X-Ray Crystal Structure Of Human Aminopeptidase N Reveals A Novel Dimer And The Basis For Peptide Processing.
J. Biol. Chem. V. 287 36804 2012
[
close entry info
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Hetero Components
(5, 24)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: BETA-D-MANNOSE (BMAa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
11
Ligand/Ion
SULFATE ION
5
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:128 , GLY A:184 , GLU A:185 , HOH A:1500 , HOH A:1584 , HOH A:1617
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
SER A:84 , TYR A:85 , ARG A:86 , ASN A:234 , THR A:271 , NAG A:1003 , HOH A:1632
BINDING SITE FOR RESIDUE NAG A 1002
03
AC3
SOFTWARE
ARG A:110 , NAG A:1002 , BMA A:1004
BINDING SITE FOR RESIDUE NAG A 1003
04
AC4
SOFTWARE
NAG A:1003
BINDING SITE FOR RESIDUE BMA A 1004
05
AC5
SOFTWARE
HIS A:239 , LYS A:241 , LEU A:243 , SER A:255 , PRO A:257 , ASN A:265 , HOH A:1254 , HOH A:1597
BINDING SITE FOR RESIDUE NAG A 1005
06
AC6
SOFTWARE
TYR A:316 , ASN A:319 , HOH A:1484
BINDING SITE FOR RESIDUE NAG A 1006
07
AC7
SOFTWARE
ASP A:433 , GLN A:596 , LEU A:624 , ASN A:625 , NAG A:1008 , HOH A:1452 , HOH A:1535 , HOH A:1658
BINDING SITE FOR RESIDUE NAG A 1007
08
AC8
SOFTWARE
NAG A:1007
BINDING SITE FOR RESIDUE NAG A 1008
09
AC9
SOFTWARE
GLU A:579 , THR A:677 , LEU A:678 , ASN A:681 , HOH A:1109 , HOH A:1763
BINDING SITE FOR RESIDUE NAG A 1009
10
BC1
SOFTWARE
GLN A:498 , SER A:502 , ALA A:524 , ASN A:527 , GLU A:781
BINDING SITE FOR RESIDUE NAG A 1010
11
BC2
SOFTWARE
ASN A:784 , ASN A:818 , THR A:820
BINDING SITE FOR RESIDUE NAG A 1011
12
BC3
SOFTWARE
HIS A:388 , HIS A:392 , GLU A:411 , ACY A:1024
BINDING SITE FOR RESIDUE ZN A 1012
13
BC4
SOFTWARE
GLY A:134 , HIS A:135 , ARG A:136 , LYS A:152 , THR A:153 , HOH A:1489
BINDING SITE FOR RESIDUE SO4 A 1013
14
BC5
SOFTWARE
ARG A:136 , THR A:153 , GLU A:154 , LEU A:155
BINDING SITE FOR RESIDUE SO4 A 1014
15
BC6
SOFTWARE
ARG A:690 , HOH A:1246 , HOH A:1328
BINDING SITE FOR RESIDUE SO4 A 1015
16
BC7
SOFTWARE
SER A:562 , ARG A:606 , HOH A:1154
BINDING SITE FOR RESIDUE SO4 A 1016
17
BC8
SOFTWARE
SER A:375 , SER A:377 , SER A:794 , LYS A:827 , HOH A:1128 , HOH A:1341 , HOH A:1638 , HOH A:1710
BINDING SITE FOR RESIDUE SO4 A 1017
18
BC9
SOFTWARE
ARG A:606 , GLN A:645 , ARG A:648
BINDING SITE FOR RESIDUE SO4 A 1018
19
CC1
SOFTWARE
ASN A:128 , TYR A:129 , ARG A:136 , LEU A:155 , HOH A:1584 , HOH A:1605
BINDING SITE FOR RESIDUE SO4 A 1019
20
CC2
SOFTWARE
TYR A:715 , LYS A:719 , GLU A:837 , TRP A:839 , HOH A:1184 , HOH A:1672 , HOH A:1701
BINDING SITE FOR RESIDUE SO4 A 1020
21
CC3
SOFTWARE
TYR A:198 , MET A:199 , ARG A:305 , ARG A:855 , HOH A:1612 , HOH A:1722
BINDING SITE FOR RESIDUE SO4 A 1021
22
CC4
SOFTWARE
SER A:651 , ARG A:658 , GLN A:691
BINDING SITE FOR RESIDUE SO4 A 1022
23
CC5
SOFTWARE
ARG A:537 , LYS A:967
BINDING SITE FOR RESIDUE SO4 A 1023
24
CC6
SOFTWARE
ALA A:353 , GLU A:355 , HIS A:388 , GLU A:389 , HIS A:392 , GLU A:411 , TYR A:477 , ZN A:1012
BINDING SITE FOR RESIDUE ACY A 1024
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (171 KB)
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