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4FUQ
Asym. Unit
Info
Asym.Unit (695 KB)
Biol.Unit 1 (175 KB)
Biol.Unit 2 (176 KB)
Biol.Unit 3 (178 KB)
Biol.Unit 4 (178 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO MATB FROM RHODOPSEUDOMONAS PALUSTRIS
Authors
:
K. C. Rank, H. A. Crosby, J. C. Escalante-Semerena, I. Rayment
Date
:
28 Jun 12 (Deposition) - 25 Jul 12 (Release) - 12 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Anl Superfamily, Methylmalonyl-Coa Synthetase, Coa, Methylmalonate, Malonate, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. A. Crosby, K. C. Rank, I. Rayment, J. C. Escalante-Semerena
Structure-Guided Expansion Of The Substrate Range Of Methylmalonyl Coenzyme A Synthetase (Matb) Of Rhodopseudomonas Palustris.
Appl. Environ. Microbiol. V. 78 6619 2012
[
close entry info
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Hetero Components
(3, 80)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2aw: SELENOMETHIONINE (MSEaw)
2ax: SELENOMETHIONINE (MSEax)
2ay: SELENOMETHIONINE (MSEay)
2az: SELENOMETHIONINE (MSEaz)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
21
Ligand/Ion
GLYCEROL
2
MSE
52
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
7
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:396 , ARG A:397 , GLY A:398 , LYS A:399 , ASP A:400 , HOH A:788 , HOH A:791 , HOH A:939
BINDING SITE FOR RESIDUE SO4 A 601
02
AC2
SOFTWARE
PRO A:82 , LEU A:83 , ASN A:84 , TYR A:87 , LEU A:161 , TYR A:162 , TYR A:206 , HIS A:207 , HOH A:968
BINDING SITE FOR RESIDUE GOL A 602
03
AC3
SOFTWARE
SER A:275 , GLY A:276 , SER A:277 , GLU A:298 , ARG A:299 , GOL A:605 , HOH A:771 , HOH A:772 , HOH A:934 , HOH A:1100
BINDING SITE FOR RESIDUE GOL A 603
04
AC4
SOFTWARE
THR A:85 , TYR A:87 , THR A:88 , LYS A:110 , HOH A:760 , GLY C:431 , GLU C:439 , ARG C:495 , HOH C:1133
BINDING SITE FOR RESIDUE GOL A 604
05
AC5
SOFTWARE
HIS A:209 , SER A:277 , ARG A:299 , GLY A:301 , MSE A:302 , MSE A:307 , GOL A:603 , HOH A:772 , HOH A:801
BINDING SITE FOR RESIDUE GOL A 605
06
AC6
SOFTWARE
GLU A:91 , TYR A:94 , PHE A:95 , SER A:170 , HOH A:1031 , HOH A:1248 , HOH A:1330
BINDING SITE FOR RESIDUE GOL A 606
07
AC7
SOFTWARE
GLY B:396 , ARG B:397 , GLY B:398 , LYS B:399 , ASP B:400 , LYS B:488 , HOH B:815 , HOH B:835 , HOH B:890
BINDING SITE FOR RESIDUE SO4 B 601
08
AC8
SOFTWARE
LYS B:230 , PHE B:231 , ARG B:255 , HOH B:1075
BINDING SITE FOR RESIDUE SO4 B 602
09
AC9
SOFTWARE
LEU B:157 , TRP B:362 , ARG B:363 , ARG B:447 , LYS B:449 , ALA B:451 , HOH B:826 , HOH B:1146 , HOH B:1209
BINDING SITE FOR RESIDUE GOL B 603
10
BC1
SOFTWARE
TYR B:87 , THR B:88 , LYS B:110 , HOH B:809 , HOH B:878 , HOH B:910 , GLY D:431 , GLU D:439 , ARG D:495
BINDING SITE FOR RESIDUE GOL B 604
11
BC2
SOFTWARE
SER B:275 , GLY B:276 , SER B:277 , GLU B:298 , ARG B:299 , GOL B:606 , HOH B:888 , HOH B:917 , HOH B:1015
BINDING SITE FOR RESIDUE GOL B 605
12
BC3
SOFTWARE
HIS B:209 , SER B:277 , ARG B:299 , GLY B:301 , MSE B:302 , THR B:303 , MSE B:307 , GOL B:605 , HOH B:862 , HOH B:917
BINDING SITE FOR RESIDUE GOL B 606
13
BC4
SOFTWARE
PHE B:358 , LYS B:359 , HOH B:1185 , HOH B:1241
BINDING SITE FOR RESIDUE GOL B 607
14
BC5
SOFTWARE
GLY C:396 , ARG C:397 , GLY C:398 , LYS C:399 , ASP C:400 , HOH C:913 , HOH C:945 , HOH C:962 , HOH C:1042
BINDING SITE FOR RESIDUE SO4 C 601
15
BC6
SOFTWARE
HIS C:209 , SER C:277 , ARG C:299 , HOH C:809
BINDING SITE FOR RESIDUE SO4 C 602
16
BC7
SOFTWARE
PHE C:231 , ARG C:255 , HOH C:837
BINDING SITE FOR RESIDUE SO4 C 603
17
BC8
SOFTWARE
SER C:275 , GLY C:276 , SER C:277 , GLU C:298 , ARG C:299 , VAL C:322 , HOH C:846 , HOH C:942 , HOH C:1061
BINDING SITE FOR RESIDUE GOL C 604
18
BC9
SOFTWARE
ALA C:32 , GLU C:33 , ALA C:36 , GLU C:145 , HOH C:771
BINDING SITE FOR RESIDUE GOL C 605
19
CC1
SOFTWARE
GLY A:431 , GLU A:439 , ARG A:495 , TYR C:87 , LYS C:110 , HOH C:803 , HOH C:877 , HOH C:1154
BINDING SITE FOR RESIDUE GOL C 606
20
CC2
SOFTWARE
PRO C:82 , ASN C:84 , TYR C:87 , LEU C:161 , TYR C:162 , TYR C:206 , HIS C:207
BINDING SITE FOR RESIDUE GOL C 607
21
CC3
SOFTWARE
MSE C:364 , PRO C:365 , GLU C:366 , LYS C:367 , HOH C:1234
BINDING SITE FOR RESIDUE GOL C 608
22
CC4
SOFTWARE
GLY D:396 , ARG D:397 , GLY D:398 , LYS D:399 , ASP D:400 , HOH D:845 , HOH D:983 , HOH D:986
BINDING SITE FOR RESIDUE SO4 D 601
23
CC5
SOFTWARE
PRO D:82 , ASN D:84 , TYR D:87 , LEU D:161 , TYR D:162 , TYR D:206 , HIS D:207 , HOH D:911
BINDING SITE FOR RESIDUE GOL D 602
24
CC6
SOFTWARE
ARG D:271 , LEU D:272 , PHE D:273 , HIS D:294 , ALA D:295 , ASP D:314 , HOH D:936
BINDING SITE FOR RESIDUE GOL D 603
25
CC7
SOFTWARE
ARG D:447 , THR D:452 , ASP D:454
BINDING SITE FOR RESIDUE GOL D 604
26
CC8
SOFTWARE
MSE D:1 , ASN D:2 , ALA D:3 , ASP D:151 , ARG D:152
BINDING SITE FOR RESIDUE GOL D 605
27
CC9
SOFTWARE
PHE D:231 , ARG D:255 , HOH D:1015
BINDING SITE FOR RESIDUE GOL D 606
28
DC1
SOFTWARE
LYS B:399 , ASN B:492 , ARG B:495 , HOH B:733 , GLU D:91 , HOH D:713 , HOH D:768 , HOH D:810 , HOH D:956
BINDING SITE FOR RESIDUE GOL D 607
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4fuqa_ (A:)
1b: SCOP_d4fuqb_ (B:)
1c: SCOP_d4fuqc_ (C:)
1d: SCOP_d4fuqd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acetyl-CoA synthetase-like
(64)
Superfamily
:
Acetyl-CoA synthetase-like
(64)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Rhodopseudomonas palustris [TaxId: 258594]
(4)
1a
d4fuqa_
A:
1b
d4fuqb_
B:
1c
d4fuqc_
C:
1d
d4fuqd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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