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4FUQ
Biol. Unit 4
Info
Asym.Unit (695 KB)
Biol.Unit 1 (175 KB)
Biol.Unit 2 (176 KB)
Biol.Unit 3 (178 KB)
Biol.Unit 4 (178 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO MATB FROM RHODOPSEUDOMONAS PALUSTRIS
Authors
:
K. C. Rank, H. A. Crosby, J. C. Escalante-Semerena, I. Rayment
Date
:
28 Jun 12 (Deposition) - 25 Jul 12 (Release) - 12 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Anl Superfamily, Methylmalonyl-Coa Synthetase, Coa, Methylmalonate, Malonate, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. A. Crosby, K. C. Rank, I. Rayment, J. C. Escalante-Semerena
Structure-Guided Expansion Of The Substrate Range Of Methylmalonyl Coenzyme A Synthetase (Matb) Of Rhodopseudomonas Palustris.
Appl. Environ. Microbiol. V. 78 6619 2012
[
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2aw: SELENOMETHIONINE (MSEaw)
2ax: SELENOMETHIONINE (MSEax)
2ay: SELENOMETHIONINE (MSEay)
2az: SELENOMETHIONINE (MSEaz)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
2
MSE
13
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: BC1 (SOFTWARE)
2: CC4 (SOFTWARE)
3: CC5 (SOFTWARE)
4: CC6 (SOFTWARE)
5: CC7 (SOFTWARE)
6: CC8 (SOFTWARE)
7: CC9 (SOFTWARE)
8: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC1
SOFTWARE
TYR B:87 , THR B:88 , LYS B:110 , HOH B:809 , HOH B:878 , HOH B:910 , GLY D:431 , GLU D:439 , ARG D:495
BINDING SITE FOR RESIDUE GOL B 604
2
CC4
SOFTWARE
GLY D:396 , ARG D:397 , GLY D:398 , LYS D:399 , ASP D:400 , HOH D:845 , HOH D:983 , HOH D:986
BINDING SITE FOR RESIDUE SO4 D 601
3
CC5
SOFTWARE
PRO D:82 , ASN D:84 , TYR D:87 , LEU D:161 , TYR D:162 , TYR D:206 , HIS D:207 , HOH D:911
BINDING SITE FOR RESIDUE GOL D 602
4
CC6
SOFTWARE
ARG D:271 , LEU D:272 , PHE D:273 , HIS D:294 , ALA D:295 , ASP D:314 , HOH D:936
BINDING SITE FOR RESIDUE GOL D 603
5
CC7
SOFTWARE
ARG D:447 , THR D:452 , ASP D:454
BINDING SITE FOR RESIDUE GOL D 604
6
CC8
SOFTWARE
MSE D:1 , ASN D:2 , ALA D:3 , ASP D:151 , ARG D:152
BINDING SITE FOR RESIDUE GOL D 605
7
CC9
SOFTWARE
PHE D:231 , ARG D:255 , HOH D:1015
BINDING SITE FOR RESIDUE GOL D 606
8
DC1
SOFTWARE
LYS B:399 , ASN B:492 , ARG B:495 , HOH B:733 , GLU D:91 , HOH D:713 , HOH D:768 , HOH D:810 , HOH D:956
BINDING SITE FOR RESIDUE GOL D 607
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4fuqa_ (A:)
1b: SCOP_d4fuqb_ (B:)
1c: SCOP_d4fuqc_ (C:)
1d: SCOP_d4fuqd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acetyl-CoA synthetase-like
(64)
Superfamily
:
Acetyl-CoA synthetase-like
(64)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Rhodopseudomonas palustris [TaxId: 258594]
(4)
1a
d4fuqa_
A:
1b
d4fuqb_
B:
1c
d4fuqc_
C:
1d
d4fuqd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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Show PDB file:
Asym.Unit (695 KB)
Header - Asym.Unit
Biol.Unit 1 (175 KB)
Header - Biol.Unit 1
Biol.Unit 2 (176 KB)
Header - Biol.Unit 2
Biol.Unit 3 (178 KB)
Header - Biol.Unit 3
Biol.Unit 4 (178 KB)
Header - Biol.Unit 4
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