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4FU4
Biol. Unit 2
Info
Asym.Unit (145 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
HUMAN COLLAGENASE 3 (MMP-13) WITH PEPTIDE FROM PRO-DOMAIN
Authors
:
E. A. Stura, L. Vera, R. Visse, H. Nagase, V. Dive
Date
:
28 Jun 12 (Deposition) - 21 Aug 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein-Peptide Complex, Collagenase, Collagen, Cleavage With Mmp3, Hydrolase, Pro-Peptide, Metzincin, Zinc Metalloprotease, Collagen Cleavage
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. A. Stura, R. Visse, P. Cuniasse, V. Dive, H. Nagase
Crystal Structure Of Full-Length Human Collagenase 3 (Mmp-13) With Peptides In The Active Site Defines Exosites In The Catalytic Domain.
Faseb J. V. 27 4395 2013
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
4
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(22, 22)
Info
All Sites
01: CC1 (SOFTWARE)
02: CC2 (SOFTWARE)
03: CC3 (SOFTWARE)
04: CC4 (SOFTWARE)
05: CC5 (SOFTWARE)
06: CC6 (SOFTWARE)
07: CC7 (SOFTWARE)
08: CC8 (SOFTWARE)
09: CC9 (SOFTWARE)
10: DC1 (SOFTWARE)
11: DC2 (SOFTWARE)
12: DC3 (SOFTWARE)
13: DC4 (SOFTWARE)
14: DC5 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
19: EC1 (SOFTWARE)
20: EC2 (SOFTWARE)
21: EC5 (SOFTWARE)
22: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC1
SOFTWARE
HIS B:222 , HIS B:226 , HIS B:232 , SER D:45 , CL D:101
BINDING SITE FOR RESIDUE ZN B 501
02
CC2
SOFTWARE
HIS B:172 , ASP B:174 , HIS B:187 , HIS B:200
BINDING SITE FOR RESIDUE ZN B 502
03
CC3
SOFTWARE
ASP B:179 , GLY B:180 , SER B:182 , LEU B:184 , ASP B:202 , GLU B:205
BINDING SITE FOR RESIDUE CA B 503
04
CC4
SOFTWARE
ASP B:162 , ASN B:194 , GLY B:196 , ASP B:198
BINDING SITE FOR RESIDUE CA B 504
05
CC5
SOFTWARE
ASP B:291 , ASP B:335 , SER B:383 , ASP B:432 , HOH B:636 , HOH B:653
BINDING SITE FOR RESIDUE CA B 505
06
CC6
SOFTWARE
ILE B:293 , ALA B:337 , ALA B:385 , VAL B:434 , CL B:507 , HOH B:635
BINDING SITE FOR RESIDUE CA B 506
07
CC7
SOFTWARE
ALA B:292 , ILE B:293 , ALA B:337 , ALA B:433 , VAL B:434 , CA B:506
BINDING SITE FOR RESIDUE CL B 507
08
CC8
SOFTWARE
PHE B:326 , GLY B:359
BINDING SITE FOR RESIDUE EDO B 508
09
CC9
SOFTWARE
ASP B:128 , ASP B:203 , ASP B:204 , GLU B:205 , THR B:206
BINDING SITE FOR RESIDUE EDO B 509
10
DC1
SOFTWARE
THR B:247 , PHE B:252 , MET B:253 , PRO B:255
BINDING SITE FOR RESIDUE EDO B 510
11
DC2
SOFTWARE
PRO A:464 , ASN B:445 , ILE B:448
BINDING SITE FOR RESIDUE EDO B 511
12
DC3
SOFTWARE
PRO B:236 , THR B:280 , PRO B:281 , HOH B:645
BINDING SITE FOR RESIDUE EDO B 512
13
DC4
SOFTWARE
THR B:391 , LYS B:393 , ILE B:454
BINDING SITE FOR RESIDUE EDO B 513
14
DC5
SOFTWARE
TYR B:104
BINDING SITE FOR RESIDUE EDO B 514
15
DC6
SOFTWARE
GLN B:260 , SER B:264
BINDING SITE FOR RESIDUE EDO B 515
16
DC7
SOFTWARE
GLN B:263 , GLY B:267
BINDING SITE FOR RESIDUE EDO B 516
17
DC8
SOFTWARE
GLY B:248 , LYS B:249 , SER B:250 , HIS B:251 , PHE B:252
BINDING SITE FOR RESIDUE EDO B 517
18
DC9
SOFTWARE
LYS B:437 , TYR B:442 , GLN B:449 , EDO B:519
BINDING SITE FOR RESIDUE EDO B 518
19
EC1
SOFTWARE
TRP B:470 , EDO B:518 , TYR D:47
BINDING SITE FOR RESIDUE EDO B 519
20
EC2
SOFTWARE
SER B:146 , THR B:149 , PRO B:150 , LEU B:151 , ASN B:152 , GLY B:269 , ASP B:270 , HOH B:641
BINDING SITE FOR RESIDUE EDO B 520
21
EC5
SOFTWARE
HIS B:222 , HIS B:226 , ZN B:501 , ARG D:44 , SER D:45 , TYR D:46
BINDING SITE FOR RESIDUE CL D 101
22
EC6
SOFTWARE
HIS B:232 , ARG D:44 , SER D:45 , TYR D:47
BINDING SITE FOR RESIDUE EDO D 102
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Protein & NOT Site
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Chain B
Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (145 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
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