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4FU4
Biol. Unit 1
Info
Asym.Unit (145 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
HUMAN COLLAGENASE 3 (MMP-13) WITH PEPTIDE FROM PRO-DOMAIN
Authors
:
E. A. Stura, L. Vera, R. Visse, H. Nagase, V. Dive
Date
:
28 Jun 12 (Deposition) - 21 Aug 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein-Peptide Complex, Collagenase, Collagen, Cleavage With Mmp3, Hydrolase, Pro-Peptide, Metzincin, Zinc Metalloprotease, Collagen Cleavage
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. A. Stura, R. Visse, P. Cuniasse, V. Dive, H. Nagase
Crystal Structure Of Full-Length Human Collagenase 3 (Mmp-13) With Peptides In The Active Site Defines Exosites In The Catalytic Domain.
Faseb J. V. 27 4395 2013
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: DC2 (SOFTWARE)
20: EC3 (SOFTWARE)
21: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:222 , HIS A:226 , HIS A:232 , ALA C:39 , GLU C:40 , CL C:101
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
HIS A:172 , ASP A:174 , HIS A:187 , HIS A:200
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
ASP A:179 , GLY A:180 , SER A:182 , LEU A:184 , ASP A:202 , GLU A:205
BINDING SITE FOR RESIDUE CA A 503
04
AC4
SOFTWARE
ASP A:162 , ASN A:194 , GLY A:196 , ASP A:198
BINDING SITE FOR RESIDUE CA A 504
05
AC5
SOFTWARE
ASP A:291 , ASP A:335 , SER A:383 , ASP A:432 , HOH A:610
BINDING SITE FOR RESIDUE CA A 505
06
AC6
SOFTWARE
ILE A:293 , ALA A:337 , ALA A:385 , VAL A:434 , CL A:507
BINDING SITE FOR RESIDUE CA A 506
07
AC7
SOFTWARE
ILE A:293 , ALA A:337 , ALA A:385 , VAL A:434 , CA A:506
BINDING SITE FOR RESIDUE CL A 507
08
AC8
SOFTWARE
SER A:467
BINDING SITE FOR RESIDUE EDO A 508
09
AC9
SOFTWARE
TYR A:440 , GLU A:451 , ARG A:461 , ARG C:44
BINDING SITE FOR RESIDUE EDO A 509
10
BC1
SOFTWARE
TYR A:416 , ASP A:423 , EDO A:514
BINDING SITE FOR RESIDUE EDO A 510
11
BC2
SOFTWARE
HOH A:609
BINDING SITE FOR RESIDUE EDO A 511
12
BC3
SOFTWARE
ASN A:194 , TYR A:195
BINDING SITE FOR RESIDUE EDO A 512
13
BC4
SOFTWARE
THR A:247 , MET A:253 , ARG A:306
BINDING SITE FOR RESIDUE EDO A 513
14
BC5
SOFTWARE
EDO A:510
BINDING SITE FOR RESIDUE EDO A 514
15
BC6
SOFTWARE
TYR A:440 , TRP A:455
BINDING SITE FOR RESIDUE EDO A 515
16
BC7
SOFTWARE
TYR A:104 , ASN A:105 , HOH A:626
BINDING SITE FOR RESIDUE EDO A 516
17
BC8
SOFTWARE
GLN A:263 , SER A:264
BINDING SITE FOR RESIDUE EDO A 517
18
BC9
SOFTWARE
LYS A:234 , ASP A:317
BINDING SITE FOR RESIDUE EDO A 518
19
DC2
SOFTWARE
PRO A:464 , ASN B:445 , ILE B:448
BINDING SITE FOR RESIDUE EDO B 511
20
EC3
SOFTWARE
ALA A:186 , HIS A:187 , HIS A:226 , ZN A:501 , PHE C:38 , ALA C:39 , GLU C:40
BINDING SITE FOR RESIDUE CL C 101
21
EC4
SOFTWARE
ARG A:297 , PRO C:49
BINDING SITE FOR RESIDUE EDO C 102
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (145 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
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