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4FU0
Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (117 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VANG D-ALA:D-SER LIGASE FROM ENTEROCOCCUS FAECALIS
Authors
:
D. Meziane-Cherif, F. A. Saul, A. Haouz, P. Courvalin
Date
:
28 Jun 12 (Deposition) - 19 Sep 12 (Release) - 13 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Vancomycin Resistance, Peptidoglycan Synthesis, D-Ala:D-Ser Ligase, Atp-Grasp Domain, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
D. Meziane-Cherif, F. A. Saul, A. Haouz, P. Courvalin
Structural And Functional Characterization Of Vang D-Ala:D-Ser Ligase Associated With Vancomycin Resistance In Enterococcus Faecalis
J. Biol. Chem. V. 287 37583 2012
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
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Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
SO4
9
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:140 , PHE A:181 , LYS A:183 , SER A:190 , ILE A:193 , GLU A:219 , GLU A:220 , THR A:221 , ILE A:222 , GLU A:226 , LEU A:247 , TYR A:258 , LYS A:261 , PHE A:301 , ASN A:311 , GLU A:312 , HOH A:556 , HOH A:588 , HOH A:593 , HOH A:637 , TYR B:258
BINDING SITE FOR RESIDUE ADP A 401
02
AC2
SOFTWARE
ARG A:297 , ASN A:314 , PRO A:317 , GLY A:318 , HOH A:501 , HOH A:525 , HOH A:575 , LYS B:257
BINDING SITE FOR RESIDUE SO4 A 402
03
AC3
SOFTWARE
ASN A:223 , THR A:303 , PRO A:304 , SER A:305
BINDING SITE FOR RESIDUE SO4 A 403
04
AC4
SOFTWARE
SER A:335 , PHE A:336 , HOH A:611 , HOH A:612
BINDING SITE FOR RESIDUE SO4 A 404
05
AC5
SOFTWARE
LYS A:108 , GLY A:188 , SER A:189 , HOH A:640
BINDING SITE FOR RESIDUE SO4 A 405
06
AC6
SOFTWARE
PHE B:181 , LYS B:183 , SER B:190 , ILE B:193 , GLU B:219 , GLU B:220 , THR B:221 , ILE B:222 , GLU B:226 , LEU B:247 , PHE B:252 , PHE B:301 , ASN B:311 , GLU B:312 , HOH B:503 , HOH B:529 , HOH B:540 , HOH B:617 , HOH B:649
BINDING SITE FOR RESIDUE ADP B 401
07
AC7
SOFTWARE
ARG B:297 , GLY B:318 , SER B:323 , ARG B:324 , HOH B:501 , HOH B:514 , HOH B:633 , HOH B:641
BINDING SITE FOR RESIDUE SO4 B 402
08
AC8
SOFTWARE
ASN B:223 , THR B:303 , PRO B:304 , SER B:305 , HOH B:594 , HOH B:600
BINDING SITE FOR RESIDUE SO4 B 403
09
AC9
SOFTWARE
TYR A:254 , ALA B:187 , GLY B:188 , SER B:189 , HIS B:212
BINDING SITE FOR RESIDUE SO4 B 404
10
BC1
SOFTWARE
LYS A:330 , LYS B:264 , TYR B:266 , ARG B:270
BINDING SITE FOR RESIDUE SO4 B 405
11
BC2
SOFTWARE
LYS B:330 , SER B:335 , PHE B:336
BINDING SITE FOR RESIDUE SO4 B 406
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4fu0a2 (A:139-348)
1b: SCOP_d4fu0b2 (B:139-348)
2a: SCOP_d4fu0a1 (A:2-138)
2b: SCOP_d4fu0b1 (B:2-138)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
automated matches
(42)
Protein domain
:
automated matches
(42)
Enterococcus faecalis [TaxId: 1351]
(1)
1a
d4fu0a2
A:139-348
1b
d4fu0b2
B:139-348
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
automated matches
(45)
Protein domain
:
automated matches
(45)
Enterococcus faecalis [TaxId: 1351]
(1)
2a
d4fu0a1
A:2-138
2b
d4fu0b1
B:2-138
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CATH Domains
(0, 0)
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Pfam Domains
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