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4FR8
Biol. Unit 2
Info
Asym.Unit (686 KB)
Biol.Unit 1 (345 KB)
Biol.Unit 2 (341 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ALDEHYDE DEHYDROGENASE-2 IN COMPLEX WITH NITROGLYCERIN
Authors
:
B. S. Lang, K. Gruber
Date
:
26 Jun 12 (Deposition) - 26 Sep 12 (Release) - 21 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Rossmann Fold, Oxidoreductase, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Lang, A. C. Gorren, G. Oberdorfer, M. V. Wenzl, C. M. Furdui, L. B. Poole, B. Mayer, K. Gruber
Vascular Bioactivation Of Nitroglycerin By Aldehyde Dehydrogenase-2: Reaction Intermediates Revealed By Crystallography And Mass Spectrometry.
J. Biol. Chem. V. 287 38124 2012
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
5c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
5d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
5f: SODIUM ION (NAf)
5g: SODIUM ION (NAg)
5h: SODIUM ION (NAh)
6a: PROPANE-1,2,3-TRIYL TRINITRATE (TNGa)
7a: UREA (UREa)
7b: UREA (UREb)
7c: UREA (UREc)
7d: UREA (UREd)
7e: UREA (UREe)
7f: UREA (UREf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
3
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
BTB
1
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6
TNG
-1
Ligand/Ion
PROPANE-1,2,3-TRIYL TRINITRATE
7
URE
1
Ligand/Ion
UREA
[
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Sites
(14, 14)
Info
All Sites
01: CC1 (SOFTWARE)
02: CC2 (SOFTWARE)
03: CC3 (SOFTWARE)
04: CC4 (SOFTWARE)
05: CC5 (SOFTWARE)
06: CC6 (SOFTWARE)
07: CC7 (SOFTWARE)
08: CC8 (SOFTWARE)
09: CC9 (SOFTWARE)
10: DC1 (SOFTWARE)
11: DC2 (SOFTWARE)
12: DC3 (SOFTWARE)
13: DC4 (SOFTWARE)
14: DC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
CC1
SOFTWARE
ILE E:165 , ILE E:166 , TRP E:168 , LYS E:192 , ALA E:194 , GLU E:195 , GLN E:196 , GLY E:225 , GLY E:229 , ALA E:230 , PHE E:243 , GLY E:245 , SER E:246 , ILE E:249 , ILE E:253 , GLN E:349 , MG E:1002 , HOH E:1222 , HOH E:1243 , HOH E:1345
BINDING SITE FOR RESIDUE ADP E 1001
02
CC2
SOFTWARE
ADP E:1001
BINDING SITE FOR RESIDUE MG E 1002
03
CC3
SOFTWARE
THR E:39 , VAL E:40 , ASP E:109 , GLN E:196
BINDING SITE FOR RESIDUE NA E 1003
04
CC4
SOFTWARE
LEU E:436 , ASN E:440 , HOH E:1317 , ASN H:440
BINDING SITE FOR RESIDUE URE E 1004
05
CC5
SOFTWARE
ILE F:165 , ILE F:166 , TRP F:168 , LYS F:192 , ALA F:194 , GLU F:195 , GLN F:196 , GLY F:225 , GLY F:229 , ALA F:230 , PHE F:243 , GLY F:245 , SER F:246 , ILE F:249 , ILE F:253 , GLN F:349 , LYS F:352 , GLU F:399 , PHE F:401 , MG F:1002 , HOH F:1189 , HOH F:1248 , HOH F:1297 , HOH F:1340
BINDING SITE FOR RESIDUE NAD F 1001
06
CC6
SOFTWARE
NAD F:1001
BINDING SITE FOR RESIDUE MG F 1002
07
CC7
SOFTWARE
THR F:39 , VAL F:40 , ASP F:109 , GLN F:196 , HOH F:1423
BINDING SITE FOR RESIDUE NA F 1003
08
CC8
SOFTWARE
ILE G:165 , ILE G:166 , TRP G:168 , LYS G:192 , ALA G:194 , GLU G:195 , GLY G:225 , GLY G:229 , ALA G:230 , PHE G:243 , SER G:246 , ILE G:249 , ILE G:253 , MG G:1002 , HOH G:1229 , HOH G:1299 , HOH G:1354
BINDING SITE FOR RESIDUE ADP G 1001
09
CC9
SOFTWARE
ADP G:1001 , HOH G:1299
BINDING SITE FOR RESIDUE MG G 1002
10
DC1
SOFTWARE
THR G:39 , VAL G:40 , ASP G:109 , GLN G:196 , HOH G:1219
BINDING SITE FOR RESIDUE NA G 1003
11
DC2
SOFTWARE
PHE D:18 , TYR D:101 , TYR D:203 , HOH D:1174 , ASP G:282 , MET G:283 , ASP G:284 , GLU G:317 , ARG G:321 , HOH G:1318
BINDING SITE FOR RESIDUE BTB G 1004
12
DC3
SOFTWARE
ILE H:165 , ILE H:166 , TRP H:168 , LYS H:192 , ALA H:194 , GLU H:195 , GLN H:196 , GLY H:225 , GLY H:229 , ALA H:230 , PHE H:243 , GLY H:245 , SER H:246 , ILE H:249 , ILE H:253 , GLN H:349 , MG H:1002 , HOH H:1265 , HOH H:1300 , HOH H:1308 , HOH H:1432 , HOH H:1435
BINDING SITE FOR RESIDUE ADP H 1001
13
DC4
SOFTWARE
ADP H:1001 , HOH H:1300
BINDING SITE FOR RESIDUE MG H 1002
14
DC5
SOFTWARE
THR H:39 , VAL H:40 , ASP H:109 , GLN H:196 , HOH H:1280
BINDING SITE FOR RESIDUE NA H 1003
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d4fr8a_ (A:)
1b: SCOP_d4fr8b_ (B:)
1c: SCOP_d4fr8c_ (C:)
1d: SCOP_d4fr8d_ (D:)
1e: SCOP_d4fr8e_ (E:)
1f: SCOP_d4fr8f_ (F:)
1g: SCOP_d4fr8g_ (G:)
1h: SCOP_d4fr8h_ (H:)
View:
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Classes
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(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(25)
1a
d4fr8a_
A:
1b
d4fr8b_
B:
1c
d4fr8c_
C:
1d
d4fr8d_
D:
1e
d4fr8e_
E:
1f
d4fr8f_
F:
1g
d4fr8g_
G:
1h
d4fr8h_
H:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Sidechain
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (686 KB)
Header - Asym.Unit
Biol.Unit 1 (345 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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