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4FR8
Biol. Unit 1
Info
Asym.Unit (686 KB)
Biol.Unit 1 (345 KB)
Biol.Unit 2 (341 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ALDEHYDE DEHYDROGENASE-2 IN COMPLEX WITH NITROGLYCERIN
Authors
:
B. S. Lang, K. Gruber
Date
:
26 Jun 12 (Deposition) - 26 Sep 12 (Release) - 21 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Rossmann Fold, Oxidoreductase, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Lang, A. C. Gorren, G. Oberdorfer, M. V. Wenzl, C. M. Furdui, L. B. Poole, B. Mayer, K. Gruber
Vascular Bioactivation Of Nitroglycerin By Aldehyde Dehydrogenase-2: Reaction Intermediates Revealed By Crystallography And Mass Spectrometry.
J. Biol. Chem. V. 287 38124 2012
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
5c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
5d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
5f: SODIUM ION (NAf)
5g: SODIUM ION (NAg)
5h: SODIUM ION (NAh)
6a: PROPANE-1,2,3-TRIYL TRINITRATE (TNGa)
7a: UREA (UREa)
7b: UREA (UREb)
7c: UREA (UREc)
7d: UREA (UREd)
7e: UREA (UREe)
7f: UREA (UREf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
BTB
-1
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
NAD
3
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6
TNG
1
Ligand/Ion
PROPANE-1,2,3-TRIYL TRINITRATE
7
URE
5
Ligand/Ion
UREA
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:169 , PHE A:170 , LEU A:173 , MET A:174 , TRP A:177 , GLN A:268 , PHE A:296 , SER A:301 , CYS A:302 , SER A:303 , ASP A:457 , PHE A:459 , HOH A:1000
BINDING SITE FOR RESIDUE TNG A 601
02
AC2
SOFTWARE
ILE A:165 , ILE A:166 , TRP A:168 , LYS A:192 , ALA A:194 , GLU A:195 , GLN A:196 , GLY A:225 , GLY A:229 , ALA A:230 , PHE A:243 , GLY A:245 , SER A:246 , ILE A:249 , VAL A:252 , ILE A:253 , GLN A:349 , LYS A:352 , GLU A:399 , PHE A:401 , MG A:603 , HOH A:816 , HOH A:926 , HOH A:942 , HOH A:980 , HOH A:982 , HOH A:994 , HOH A:996
BINDING SITE FOR RESIDUE NAD A 1001
03
AC3
SOFTWARE
HOH A:942 , HOH A:980 , NAD A:1001
BINDING SITE FOR RESIDUE MG A 603
04
AC4
SOFTWARE
PHE A:70 , GLU A:157 , PRO A:158 , VAL A:159 , HOH A:776 , HOH A:985 , TYR B:468
BINDING SITE FOR RESIDUE URE A 604
05
AC5
SOFTWARE
THR A:39 , VAL A:40 , ASP A:109 , GLN A:196 , HOH A:806 , HOH A:1042
BINDING SITE FOR RESIDUE NA A 605
06
AC6
SOFTWARE
ILE B:165 , ILE B:166 , TRP B:168 , LYS B:192 , ALA B:194 , GLU B:195 , GLN B:196 , GLY B:225 , GLY B:229 , ALA B:230 , PHE B:243 , SER B:246 , ILE B:249 , ILE B:253 , MG B:1002 , HOH B:1272 , HOH B:1276 , HOH B:1279 , HOH B:1364
BINDING SITE FOR RESIDUE ADP B 1001
07
AC7
SOFTWARE
ADP B:1001
BINDING SITE FOR RESIDUE MG B 1002
08
AC8
SOFTWARE
TYR A:468 , GLU B:157 , PRO B:158 , VAL B:159 , HOH B:1184 , HOH B:1362
BINDING SITE FOR RESIDUE URE B 1003
09
AC9
SOFTWARE
THR B:39 , VAL B:40 , ASP B:109 , GLN B:196 , HOH B:1414
BINDING SITE FOR RESIDUE NA B 1004
10
BC1
SOFTWARE
ILE C:165 , ILE C:166 , TRP C:168 , LYS C:192 , ALA C:194 , GLU C:195 , GLN C:196 , GLY C:225 , GLY C:229 , ALA C:230 , PHE C:243 , GLY C:245 , SER C:246 , ILE C:249 , ILE C:253 , GLN C:349 , LYS C:352 , GLU C:399 , PHE C:401 , MG C:1002 , HOH C:1273 , HOH C:1361 , HOH C:1367
BINDING SITE FOR RESIDUE NAD C 1001
11
BC2
SOFTWARE
NAD C:1001 , HOH C:1315
BINDING SITE FOR RESIDUE MG C 1002
12
BC3
SOFTWARE
GLU C:157 , PRO C:158 , VAL C:159 , HOH C:1291 , HOH C:1304
BINDING SITE FOR RESIDUE URE C 1003
13
BC4
SOFTWARE
THR C:39 , VAL C:40 , ASP C:109 , GLN C:196 , HOH C:1438
BINDING SITE FOR RESIDUE NA C 1004
14
BC5
SOFTWARE
GLN C:13 , ASP C:336
BINDING SITE FOR RESIDUE URE C 1005
15
BC6
SOFTWARE
ILE D:165 , ILE D:166 , TRP D:168 , LYS D:192 , GLU D:195 , GLN D:196 , GLY D:225 , GLY D:229 , ALA D:230 , PHE D:243 , GLY D:245 , SER D:246 , ILE D:249 , ILE D:253 , GLN D:349 , LYS D:352 , GLU D:399 , PHE D:401 , MG D:1002 , HOH D:1299 , HOH D:1425 , HOH D:1434 , HOH D:1466 , HOH D:1484
BINDING SITE FOR RESIDUE NAD D 1001
16
BC7
SOFTWARE
NAD D:1001 , HOH D:1415
BINDING SITE FOR RESIDUE MG D 1002
17
BC8
SOFTWARE
GLU D:157 , PRO D:158 , VAL D:159 , HOH D:1193 , HOH D:1393
BINDING SITE FOR RESIDUE URE D 1003
18
BC9
SOFTWARE
THR D:39 , VAL D:40 , ASP D:109 , GLN D:196 , HOH D:1296
BINDING SITE FOR RESIDUE NA D 1004
19
DC2
SOFTWARE
PHE D:18 , TYR D:101 , TYR D:203 , HOH D:1174 , ASP G:282 , MET G:283 , ASP G:284 , GLU G:317 , ARG G:321 , HOH G:1318
BINDING SITE FOR RESIDUE BTB G 1004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d4fr8a_ (A:)
1b: SCOP_d4fr8b_ (B:)
1c: SCOP_d4fr8c_ (C:)
1d: SCOP_d4fr8d_ (D:)
1e: SCOP_d4fr8e_ (E:)
1f: SCOP_d4fr8f_ (F:)
1g: SCOP_d4fr8g_ (G:)
1h: SCOP_d4fr8h_ (H:)
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Classes
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Superfamilies
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(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(25)
1a
d4fr8a_
A:
1b
d4fr8b_
B:
1c
d4fr8c_
C:
1d
d4fr8d_
D:
1e
d4fr8e_
E:
1f
d4fr8f_
F:
1g
d4fr8g_
G:
1h
d4fr8h_
H:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (686 KB)
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