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Biol. Unit 3
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Asym.Unit (3.7 MB)
Biol.Unit 1 (957 KB)
Biol.Unit 2 (967 KB)
Biol.Unit 3 (970 KB)
Biol.Unit 4 (972 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY C05 BOUND TO H3 INFLUENZA HEMAGGLUTININ
Authors
:
D. C. Ekiert, I. A. Wilson
Date
:
25 Jun 12 (Deposition) - 19 Sep 12 (Release) - 10 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x
Biol. Unit 1: A,B,C,D,E,F,a,b,c,d,e,f (1x)
Biol. Unit 2: G,H,I,J,K,L,g,h,i,j,k,l (1x)
Biol. Unit 3: M,N,O,P,Q,R,m,n,o,p,q,r (1x)
Biol. Unit 4: S,T,U,V,W,X,s,t,u,v,w,x (1x)
Keywords
:
Viral Fusion Protein, Immunoglobulin, Virus Attachment And Entry, Immune Recognition, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Ekiert, A. K. Kashyap, J. Steel, A. Rubrum, G. Bhabha, R. Khayat, J. H. Lee, M. A. Dillon, R. E. O'Neil, A. M. Faynboym, M. Horowitz, L. Horowitz, A. B. Ward, P. Palese, R. Webby, R. A. Lerner, R. R. Bhatt, I. A. Wilson
Cross-Neutralization Of Influenza A Viruses Mediated By A Single Antibody Loop.
Nature V. 489 526 2012
[
close entry info
]
Hetero Components
(4, 30)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
3al: N-ACETYL-D-GLUCOSAMINE (NAGal)
3am: N-ACETYL-D-GLUCOSAMINE (NAGam)
3an: N-ACETYL-D-GLUCOSAMINE (NAGan)
3ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
3ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
3aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
3ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
3as: N-ACETYL-D-GLUCOSAMINE (NAGas)
3at: N-ACETYL-D-GLUCOSAMINE (NAGat)
3au: N-ACETYL-D-GLUCOSAMINE (NAGau)
3av: N-ACETYL-D-GLUCOSAMINE (NAGav)
3aw: N-ACETYL-D-GLUCOSAMINE (NAGaw)
3ax: N-ACETYL-D-GLUCOSAMINE (NAGax)
3ay: N-ACETYL-D-GLUCOSAMINE (NAGay)
3az: N-ACETYL-D-GLUCOSAMINE (NAGaz)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3ba: N-ACETYL-D-GLUCOSAMINE (NAGba)
3bb: N-ACETYL-D-GLUCOSAMINE (NAGbb)
3bc: N-ACETYL-D-GLUCOSAMINE (NAGbc)
3bd: N-ACETYL-D-GLUCOSAMINE (NAGbd)
3be: N-ACETYL-D-GLUCOSAMINE (NAGbe)
3bf: N-ACETYL-D-GLUCOSAMINE (NAGbf)
3bg: N-ACETYL-D-GLUCOSAMINE (NAGbg)
3bh: N-ACETYL-D-GLUCOSAMINE (NAGbh)
3bi: N-ACETYL-D-GLUCOSAMINE (NAGbi)
3bj: N-ACETYL-D-GLUCOSAMINE (NAGbj)
3bk: N-ACETYL-D-GLUCOSAMINE (NAGbk)
3bl: N-ACETYL-D-GLUCOSAMINE (NAGbl)
3bm: N-ACETYL-D-GLUCOSAMINE (NAGbm)
3bn: N-ACETYL-D-GLUCOSAMINE (NAGbn)
3bo: N-ACETYL-D-GLUCOSAMINE (NAGbo)
3bp: N-ACETYL-D-GLUCOSAMINE (NAGbp)
3bq: N-ACETYL-D-GLUCOSAMINE (NAGbq)
3br: N-ACETYL-D-GLUCOSAMINE (NAGbr)
3bs: N-ACETYL-D-GLUCOSAMINE (NAGbs)
3bt: N-ACETYL-D-GLUCOSAMINE (NAGbt)
3bu: N-ACETYL-D-GLUCOSAMINE (NAGbu)
3bv: N-ACETYL-D-GLUCOSAMINE (NAGbv)
3bw: N-ACETYL-D-GLUCOSAMINE (NAGbw)
3bx: N-ACETYL-D-GLUCOSAMINE (NAGbx)
3by: N-ACETYL-D-GLUCOSAMINE (NAGby)
3bz: N-ACETYL-D-GLUCOSAMINE (NAGbz)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: PYROGLUTAMIC ACID (PCAa)
4b: PYROGLUTAMIC ACID (PCAb)
4c: PYROGLUTAMIC ACID (PCAc)
4d: PYROGLUTAMIC ACID (PCAd)
4e: PYROGLUTAMIC ACID (PCAe)
4f: PYROGLUTAMIC ACID (PCAf)
4g: PYROGLUTAMIC ACID (PCAg)
4h: PYROGLUTAMIC ACID (PCAh)
4i: PYROGLUTAMIC ACID (PCAi)
4j: PYROGLUTAMIC ACID (PCAj)
4k: PYROGLUTAMIC ACID (PCAk)
4l: PYROGLUTAMIC ACID (PCAl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
21
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PCA
3
Mod. Amino Acid
PYROGLUTAMIC ACID
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: FC5 (SOFTWARE)
02: FC6 (SOFTWARE)
03: FC7 (SOFTWARE)
04: FC8 (SOFTWARE)
05: FC9 (SOFTWARE)
06: GC1 (SOFTWARE)
07: GC2 (SOFTWARE)
08: GC3 (SOFTWARE)
09: GC4 (SOFTWARE)
10: GC5 (SOFTWARE)
11: GC6 (SOFTWARE)
12: GC7 (SOFTWARE)
13: GC8 (SOFTWARE)
14: GC9 (SOFTWARE)
15: HC1 (SOFTWARE)
16: HC2 (SOFTWARE)
17: HC3 (SOFTWARE)
18: HC4 (SOFTWARE)
19: HC5 (SOFTWARE)
20: HC6 (SOFTWARE)
21: HC7 (SOFTWARE)
22: HC8 (SOFTWARE)
23: HC9 (SOFTWARE)
24: IC1 (SOFTWARE)
25: IC2 (SOFTWARE)
26: IC3 (SOFTWARE)
27: IC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
FC5
SOFTWARE
ASN M:38 , THR M:318 , LEU N:52
BINDING SITE FOR RESIDUE NAG M 501
02
FC6
SOFTWARE
ASN M:81 , GLU M:119 , PHE M:120
BINDING SITE FOR RESIDUE NAG M 502
03
FC7
SOFTWARE
ASN M:165 , THR M:167 , NAG M:504
BINDING SITE FOR RESIDUE NAG M 503
04
FC8
SOFTWARE
NAG M:503 , BMA M:505 , TRP O:222
BINDING SITE FOR RESIDUE NAG M 504
05
FC9
SOFTWARE
NAG M:504 , MAN M:506
BINDING SITE FOR RESIDUE BMA M 505
06
GC1
SOFTWARE
BMA M:505 , LYS u:75
BINDING SITE FOR RESIDUE MAN M 506
07
GC2
SOFTWARE
ASN M:285 , VAL M:297 , NAG M:508
BINDING SITE FOR RESIDUE NAG M 507
08
GC3
SOFTWARE
NAG M:507 , GLU N:69
BINDING SITE FOR RESIDUE NAG M 508
09
GC4
SOFTWARE
ALA N:147 , GLU N:150 , ASN N:154 , GLU e:16
BINDING SITE FOR RESIDUE NAG N 201
10
GC5
SOFTWARE
ASN O:38 , THR O:318
BINDING SITE FOR RESIDUE NAG O 501
11
GC6
SOFTWARE
ASN O:81 , GLU O:119 , PHE O:120
BINDING SITE FOR RESIDUE NAG O 502
12
GC7
SOFTWARE
ASN O:165 , THR O:167 , NAG O:504
BINDING SITE FOR RESIDUE NAG O 503
13
GC8
SOFTWARE
NAG O:503 , BMA O:505 , PRO Q:221 , TRP Q:222
BINDING SITE FOR RESIDUE NAG O 504
14
GC9
SOFTWARE
NAG O:504 , MAN O:506
BINDING SITE FOR RESIDUE BMA O 505
15
HC1
SOFTWARE
BMA O:505
BINDING SITE FOR RESIDUE MAN O 506
16
HC2
SOFTWARE
SER O:45 , ASN O:285 , VAL O:297 , NAG O:508
BINDING SITE FOR RESIDUE NAG O 507
17
HC3
SOFTWARE
NAG O:507
BINDING SITE FOR RESIDUE NAG O 508
18
HC4
SOFTWARE
ALA P:147 , GLU P:150 , ASN P:154
BINDING SITE FOR RESIDUE NAG P 201
19
HC5
SOFTWARE
ASN Q:38 , THR Q:318 , LEU R:52
BINDING SITE FOR RESIDUE NAG Q 501
20
HC6
SOFTWARE
ASN Q:81 , GLU Q:119 , PHE Q:120
BINDING SITE FOR RESIDUE NAG Q 502
21
HC7
SOFTWARE
ASN Q:165 , THR Q:167 , NAG Q:504
BINDING SITE FOR RESIDUE NAG Q 503
22
HC8
SOFTWARE
TRP M:222 , NAG Q:503 , BMA Q:505
BINDING SITE FOR RESIDUE NAG Q 504
23
HC9
SOFTWARE
NAG Q:504 , MAN Q:506
BINDING SITE FOR RESIDUE BMA Q 505
24
IC1
SOFTWARE
BMA Q:505
BINDING SITE FOR RESIDUE MAN Q 506
25
IC2
SOFTWARE
SER Q:45 , ASN Q:285 , VAL Q:297 , NAG Q:508
BINDING SITE FOR RESIDUE NAG Q 507
26
IC3
SOFTWARE
NAG Q:507 , GLU R:69
BINDING SITE FOR RESIDUE NAG Q 508
27
IC4
SOFTWARE
ALA R:147 , GLU R:150 , ASN R:154 , THR R:156
BINDING SITE FOR RESIDUE NAG R 201
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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Atom Selection
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)
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All Atoms
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Protein & NOT Site
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Chain O
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Chain Q
Chain R
Chain m
Chain n
Chain o
Chain p
Chain q
Chain r
Asymmetric Unit 1
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Asym.Unit (3.7 MB)
Header - Asym.Unit
Biol.Unit 1 (957 KB)
Header - Biol.Unit 1
Biol.Unit 2 (967 KB)
Header - Biol.Unit 2
Biol.Unit 3 (970 KB)
Header - Biol.Unit 3
Biol.Unit 4 (972 KB)
Header - Biol.Unit 4
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