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Biol. Unit 1
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Asym.Unit (3.7 MB)
Biol.Unit 1 (957 KB)
Biol.Unit 2 (967 KB)
Biol.Unit 3 (970 KB)
Biol.Unit 4 (972 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY C05 BOUND TO H3 INFLUENZA HEMAGGLUTININ
Authors
:
D. C. Ekiert, I. A. Wilson
Date
:
25 Jun 12 (Deposition) - 19 Sep 12 (Release) - 10 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x
Biol. Unit 1: A,B,C,D,E,F,a,b,c,d,e,f (1x)
Biol. Unit 2: G,H,I,J,K,L,g,h,i,j,k,l (1x)
Biol. Unit 3: M,N,O,P,Q,R,m,n,o,p,q,r (1x)
Biol. Unit 4: S,T,U,V,W,X,s,t,u,v,w,x (1x)
Keywords
:
Viral Fusion Protein, Immunoglobulin, Virus Attachment And Entry, Immune Recognition, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Ekiert, A. K. Kashyap, J. Steel, A. Rubrum, G. Bhabha, R. Khayat, J. H. Lee, M. A. Dillon, R. E. O'Neil, A. M. Faynboym, M. Horowitz, L. Horowitz, A. B. Ward, P. Palese, R. Webby, R. A. Lerner, R. R. Bhatt, I. A. Wilson
Cross-Neutralization Of Influenza A Viruses Mediated By A Single Antibody Loop.
Nature V. 489 526 2012
[
close entry info
]
Hetero Components
(4, 27)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
3al: N-ACETYL-D-GLUCOSAMINE (NAGal)
3am: N-ACETYL-D-GLUCOSAMINE (NAGam)
3an: N-ACETYL-D-GLUCOSAMINE (NAGan)
3ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
3ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
3aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
3ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
3as: N-ACETYL-D-GLUCOSAMINE (NAGas)
3at: N-ACETYL-D-GLUCOSAMINE (NAGat)
3au: N-ACETYL-D-GLUCOSAMINE (NAGau)
3av: N-ACETYL-D-GLUCOSAMINE (NAGav)
3aw: N-ACETYL-D-GLUCOSAMINE (NAGaw)
3ax: N-ACETYL-D-GLUCOSAMINE (NAGax)
3ay: N-ACETYL-D-GLUCOSAMINE (NAGay)
3az: N-ACETYL-D-GLUCOSAMINE (NAGaz)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3ba: N-ACETYL-D-GLUCOSAMINE (NAGba)
3bb: N-ACETYL-D-GLUCOSAMINE (NAGbb)
3bc: N-ACETYL-D-GLUCOSAMINE (NAGbc)
3bd: N-ACETYL-D-GLUCOSAMINE (NAGbd)
3be: N-ACETYL-D-GLUCOSAMINE (NAGbe)
3bf: N-ACETYL-D-GLUCOSAMINE (NAGbf)
3bg: N-ACETYL-D-GLUCOSAMINE (NAGbg)
3bh: N-ACETYL-D-GLUCOSAMINE (NAGbh)
3bi: N-ACETYL-D-GLUCOSAMINE (NAGbi)
3bj: N-ACETYL-D-GLUCOSAMINE (NAGbj)
3bk: N-ACETYL-D-GLUCOSAMINE (NAGbk)
3bl: N-ACETYL-D-GLUCOSAMINE (NAGbl)
3bm: N-ACETYL-D-GLUCOSAMINE (NAGbm)
3bn: N-ACETYL-D-GLUCOSAMINE (NAGbn)
3bo: N-ACETYL-D-GLUCOSAMINE (NAGbo)
3bp: N-ACETYL-D-GLUCOSAMINE (NAGbp)
3bq: N-ACETYL-D-GLUCOSAMINE (NAGbq)
3br: N-ACETYL-D-GLUCOSAMINE (NAGbr)
3bs: N-ACETYL-D-GLUCOSAMINE (NAGbs)
3bt: N-ACETYL-D-GLUCOSAMINE (NAGbt)
3bu: N-ACETYL-D-GLUCOSAMINE (NAGbu)
3bv: N-ACETYL-D-GLUCOSAMINE (NAGbv)
3bw: N-ACETYL-D-GLUCOSAMINE (NAGbw)
3bx: N-ACETYL-D-GLUCOSAMINE (NAGbx)
3by: N-ACETYL-D-GLUCOSAMINE (NAGby)
3bz: N-ACETYL-D-GLUCOSAMINE (NAGbz)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: PYROGLUTAMIC ACID (PCAa)
4b: PYROGLUTAMIC ACID (PCAb)
4c: PYROGLUTAMIC ACID (PCAc)
4d: PYROGLUTAMIC ACID (PCAd)
4e: PYROGLUTAMIC ACID (PCAe)
4f: PYROGLUTAMIC ACID (PCAf)
4g: PYROGLUTAMIC ACID (PCAg)
4h: PYROGLUTAMIC ACID (PCAh)
4i: PYROGLUTAMIC ACID (PCAi)
4j: PYROGLUTAMIC ACID (PCAj)
4k: PYROGLUTAMIC ACID (PCAk)
4l: PYROGLUTAMIC ACID (PCAl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
18
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PCA
3
Mod. Amino Acid
PYROGLUTAMIC ACID
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC8 (SOFTWARE)
26: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:81 , GLU A:119 , PHE A:120 , SER j:7 , PRO j:8
BINDING SITE FOR RESIDUE NAG A 601
02
AC2
SOFTWARE
ASN A:165 , THR A:167 , NAG A:603
BINDING SITE FOR RESIDUE NAG A 602
03
AC3
SOFTWARE
NAG A:602 , BMA A:604 , TRP C:222
BINDING SITE FOR RESIDUE NAG A 603
04
AC4
SOFTWARE
NAG A:603 , MAN A:605
BINDING SITE FOR RESIDUE BMA A 604
05
AC5
SOFTWARE
BMA A:604
BINDING SITE FOR RESIDUE MAN A 605
06
AC6
SOFTWARE
ASN A:285 , VAL A:297 , NAG A:607
BINDING SITE FOR RESIDUE NAG A 606
07
AC7
SOFTWARE
NAG A:606 , GLU B:69
BINDING SITE FOR RESIDUE NAG A 607
08
AC8
SOFTWARE
ALA B:147 , GLU B:150 , ASN B:154
BINDING SITE FOR RESIDUE NAG B 201
09
AC9
SOFTWARE
ASN C:38 , THR C:318 , LEU D:52
BINDING SITE FOR RESIDUE NAG C 501
10
BC1
SOFTWARE
ASN C:165 , THR C:167 , NAG C:503
BINDING SITE FOR RESIDUE NAG C 502
11
BC2
SOFTWARE
NAG C:502 , BMA C:504 , TRP E:222
BINDING SITE FOR RESIDUE NAG C 503
12
BC3
SOFTWARE
NAG C:503 , MAN C:505
BINDING SITE FOR RESIDUE BMA C 504
13
BC4
SOFTWARE
BMA C:504
BINDING SITE FOR RESIDUE MAN C 505
14
BC5
SOFTWARE
SER C:45 , ASN C:285 , VAL C:297 , NAG C:507
BINDING SITE FOR RESIDUE NAG C 506
15
BC6
SOFTWARE
NAG C:506 , GLU D:69
BINDING SITE FOR RESIDUE NAG C 507
16
BC7
SOFTWARE
ALA D:147 , GLU D:150 , ASN D:154
BINDING SITE FOR RESIDUE NAG D 201
17
BC8
SOFTWARE
ASN E:81 , GLU E:119 , PHE E:120
BINDING SITE FOR RESIDUE NAG E 601
18
BC9
SOFTWARE
ASN E:165 , THR E:167 , NAG E:603
BINDING SITE FOR RESIDUE NAG E 602
19
CC1
SOFTWARE
TRP A:222 , NAG E:602 , BMA E:604
BINDING SITE FOR RESIDUE NAG E 603
20
CC2
SOFTWARE
NAG E:603 , MAN E:605
BINDING SITE FOR RESIDUE BMA E 604
21
CC3
SOFTWARE
BMA E:604
BINDING SITE FOR RESIDUE MAN E 605
22
CC4
SOFTWARE
SER E:45 , ASN E:285 , VAL E:297 , ASN E:298 , NAG E:607
BINDING SITE FOR RESIDUE NAG E 606
23
CC5
SOFTWARE
NAG E:606
BINDING SITE FOR RESIDUE NAG E 607
24
CC6
SOFTWARE
ALA F:147 , GLU F:150 , ASN F:154
BINDING SITE FOR RESIDUE NAG F 201
25
CC8
SOFTWARE
ASN G:81 , GLU G:119 , SER d:7 , PRO d:8 , SER d:9
BINDING SITE FOR RESIDUE NAG G 502
26
GC4
SOFTWARE
ALA N:147 , GLU N:150 , ASN N:154 , GLU e:16
BINDING SITE FOR RESIDUE NAG N 201
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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Atom Selection
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all
)
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Chain D
Chain E
Chain F
Chain a
Chain b
Chain c
Chain d
Chain e
Chain f
Asymmetric Unit 1
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Asym.Unit (3.7 MB)
Header - Asym.Unit
Biol.Unit 1 (957 KB)
Header - Biol.Unit 1
Biol.Unit 2 (967 KB)
Header - Biol.Unit 2
Biol.Unit 3 (970 KB)
Header - Biol.Unit 3
Biol.Unit 4 (972 KB)
Header - Biol.Unit 4
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