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4FQF
Asym. Unit
Info
Asym.Unit (337 KB)
Biol.Unit 1 (328 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A THIONITRATE INTERMEDIATE OF HUMAN ALDEHYDE DEHYDROGENASE-2
Authors
:
B. S. Lang, K. Gruber
Date
:
25 Jun 12 (Deposition) - 26 Sep 12 (Release) - 21 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Rossmann Fold, Oxidoreductase, Aldehydes, Esters, Organic Nitrates, Nad, Oxidoreductase-Intermediate Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Lang, A. C. Gorren, G. Oberdorfer, M. V. Wenzl, C. M. Furdui, L. B. Poole, B. Mayer, K. Gruber
Vascular Bioactivation Of Nitroglycerin By Aldehyde Dehydrogenase-2: Reaction Intermediates Revealed By Crystallography And Mass Spectrometry.
J. Biol. Chem. V. 287 38124 2012
[
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Hetero Components
(5, 22)
Info
All Hetero Components
1a: NITROGEN DIOXIDE (2NOa)
1b: NITROGEN DIOXIDE (2NOb)
1c: NITROGEN DIOXIDE (2NOc)
1d: NITROGEN DIOXIDE (2NOd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
4a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
4b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
4c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
4d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
5a: UREA (UREa)
5b: UREA (UREb)
5c: UREA (UREc)
5d: UREA (UREd)
5e: UREA (UREe)
5f: UREA (UREf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2NO
4
Ligand/Ion
NITROGEN DIOXIDE
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
NA
4
Ligand/Ion
SODIUM ION
4
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
5
URE
6
Ligand/Ion
UREA
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:169 , CYS A:302 , NAD A:702
BINDING SITE FOR RESIDUE 2NO A 701
02
AC2
SOFTWARE
ILE A:165 , ILE A:166 , PRO A:167 , TRP A:168 , ASN A:169 , LYS A:192 , ALA A:194 , GLU A:195 , GLY A:225 , GLY A:229 , ALA A:230 , PHE A:243 , GLY A:245 , SER A:246 , ILE A:249 , LEU A:269 , CYS A:302 , GLN A:349 , LYS A:352 , GLU A:399 , 2NO A:701 , MG A:703 , HOH A:817 , HOH A:907 , HOH A:924 , HOH A:946 , HOH A:1018
BINDING SITE FOR RESIDUE NAD A 702
03
AC3
SOFTWARE
NAD A:702 , HOH A:1018
BINDING SITE FOR RESIDUE MG A 703
04
AC4
SOFTWARE
GLU A:157 , PRO A:158 , VAL A:159 , HOH A:1022 , GLN B:447
BINDING SITE FOR RESIDUE URE A 704
05
AC5
SOFTWARE
THR A:39 , VAL A:40 , ASP A:109 , GLN A:196 , HOH A:816 , HOH A:827
BINDING SITE FOR RESIDUE NA A 705
06
AC6
SOFTWARE
PHE A:151 , ASN C:440 , SER C:443 , TYR D:153 , ARG D:155
BINDING SITE FOR RESIDUE URE A 706
07
AC7
SOFTWARE
ASN A:440 , SER A:443 , TYR B:153 , ARG B:155 , PHE C:151
BINDING SITE FOR RESIDUE URE B 701
08
AC8
SOFTWARE
ASN B:169 , CYS B:302 , NAD B:703
BINDING SITE FOR RESIDUE 2NO B 702
09
AC9
SOFTWARE
ILE B:165 , ILE B:166 , PRO B:167 , TRP B:168 , ASN B:169 , LYS B:192 , ALA B:194 , GLU B:195 , GLY B:225 , GLY B:229 , ALA B:230 , PHE B:243 , GLY B:245 , SER B:246 , ILE B:249 , LEU B:269 , CYS B:302 , GLN B:349 , LYS B:352 , GLU B:399 , PHE B:401 , 2NO B:702 , MG B:704 , HOH B:2182 , HOH B:2197 , HOH B:2210 , HOH B:2223 , HOH B:2226 , HOH B:2236
BINDING SITE FOR RESIDUE NAD B 703
10
BC1
SOFTWARE
NAD B:703 , HOH B:2197 , HOH B:2226
BINDING SITE FOR RESIDUE MG B 704
11
BC2
SOFTWARE
GLN A:447 , GLU B:157 , PRO B:158 , VAL B:159 , HOH B:2344
BINDING SITE FOR RESIDUE URE B 705
12
BC3
SOFTWARE
THR B:39 , VAL B:40 , ASP B:109 , GLN B:196 , HOH B:2353 , HOH B:2354
BINDING SITE FOR RESIDUE NA B 706
13
BC4
SOFTWARE
ASN C:169 , CYS C:302 , NAD C:703 , HOH C:996
BINDING SITE FOR RESIDUE 2NO C 701
14
BC5
SOFTWARE
NAD C:703
BINDING SITE FOR RESIDUE MG C 702
15
BC6
SOFTWARE
ILE C:165 , ILE C:166 , PRO C:167 , TRP C:168 , ASN C:169 , LYS C:192 , ALA C:194 , GLU C:195 , GLY C:225 , GLY C:229 , ALA C:230 , PHE C:243 , GLY C:245 , SER C:246 , ILE C:249 , LEU C:269 , CYS C:302 , GLN C:349 , LYS C:352 , GLU C:399 , PHE C:401 , 2NO C:701 , MG C:702 , HOH C:831 , HOH C:922 , HOH C:925 , HOH C:997
BINDING SITE FOR RESIDUE NAD C 703
16
BC7
SOFTWARE
GLU C:157 , PRO C:158 , VAL C:159 , HOH C:964 , GLN D:447
BINDING SITE FOR RESIDUE URE C 704
17
BC8
SOFTWARE
THR C:39 , VAL C:40 , ASP C:109 , GLN C:196 , HOH C:934
BINDING SITE FOR RESIDUE NA C 705
18
BC9
SOFTWARE
ASN D:169 , CYS D:302 , NAD D:702
BINDING SITE FOR RESIDUE 2NO D 701
19
CC1
SOFTWARE
ILE D:165 , ILE D:166 , PRO D:167 , TRP D:168 , ASN D:169 , LYS D:192 , ALA D:194 , GLU D:195 , GLN D:196 , GLY D:225 , GLY D:229 , ALA D:230 , PHE D:243 , GLY D:245 , SER D:246 , ILE D:249 , LEU D:269 , CYS D:302 , GLN D:349 , GLU D:399 , 2NO D:701 , MG D:703 , HOH D:876 , HOH D:907 , HOH D:948 , HOH D:953
BINDING SITE FOR RESIDUE NAD D 702
20
CC2
SOFTWARE
NAD D:702
BINDING SITE FOR RESIDUE MG D 703
21
CC3
SOFTWARE
GLN C:447 , PHE D:70 , GLU D:157 , PRO D:158 , VAL D:159 , HOH D:975
BINDING SITE FOR RESIDUE URE D 704
22
CC4
SOFTWARE
THR D:39 , VAL D:40 , ASP D:109 , GLN D:196 , HOH D:918 , HOH D:926
BINDING SITE FOR RESIDUE NA D 705
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4fqfa_ (A:)
1b: SCOP_d4fqfb_ (B:)
1c: SCOP_d4fqfc_ (C:)
1d: SCOP_d4fqfd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(25)
1a
d4fqfa_
A:
1b
d4fqfb_
B:
1c
d4fqfc_
C:
1d
d4fqfd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
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Chain C
Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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Asym.Unit (337 KB)
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