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4FNK
Asym. Unit
Info
Asym.Unit (550 KB)
Biol.Unit 1 (535 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE A/HONG KONG/1/1968 (H3N2) INFLUENZA VIRUS HEMAGGLUTININ
Authors
:
D. C. Ekiert, I. A. Wilson
Date
:
19 Jun 12 (Deposition) - 19 Sep 12 (Release) - 10 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Fusion Protein, Virus Attachment And Entry, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Ekiert, A. K. Kashyap, J. Steel, A. Rubrum, G. Bhabha, R. Khayat, J. H. Lee, M. A. Dillon, R. E. O'Neil, A. M. Faynboym, M. Horowitz, L. Horowitz, A. B. Ward, P. Palese, R. Webby, R. A. Lerner, R. R. Bhatt, I. A. Wilson
Cross-Neutralization Of Influenza A Viruses Mediated By A Single Antibody Loop.
Nature V. 489 526 2012
[
close entry info
]
Hetero Components
(5, 39)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
GOL
2
Ligand/Ion
GLYCEROL
3
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
25
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:22 , GLU A:35 , PRO A:324 , HOH A:762 , HOH A:792 , HOH A:839
BINDING SITE FOR RESIDUE NAG A 401
02
AC2
SOFTWARE
ASN A:38 , THR A:318 , LEU B:52
BINDING SITE FOR RESIDUE NAG A 402
03
AC3
SOFTWARE
ASN A:81 , GLU A:119 , PHE A:120 , HOH A:702 , PRO E:324 , LYS E:326
BINDING SITE FOR RESIDUE NAG A 403
04
AC4
SOFTWARE
ASN A:165 , THR A:167 , NAG A:405 , HOH A:555 , HOH A:831 , SER C:219 , HOH C:780
BINDING SITE FOR RESIDUE NAG A 404
05
AC5
SOFTWARE
NAG A:404 , BMA A:406 , PRO C:221 , TRP C:222 , HOH C:780
BINDING SITE FOR RESIDUE NAG A 405
06
AC6
SOFTWARE
NAG A:405 , MAN A:407
BINDING SITE FOR RESIDUE BMA A 406
07
AC7
SOFTWARE
BMA A:406
BINDING SITE FOR RESIDUE MAN A 407
08
AC8
SOFTWARE
SER A:45 , ASN A:285 , VAL A:297 , NAG A:409 , HOH A:629 , HOH A:694 , HOH A:793
BINDING SITE FOR RESIDUE NAG A 408
09
AC9
SOFTWARE
NAG A:408 , HOH A:694 , GLU B:69
BINDING SITE FOR RESIDUE NAG A 409
10
BC1
SOFTWARE
ARG A:207 , ARG A:208 , HOH A:559 , HOH A:587 , HOH A:652 , ARG C:224
BINDING SITE FOR RESIDUE SO4 A 410
11
BC2
SOFTWARE
ALA B:147 , GLU B:150 , ASN B:154 , HOH B:500 , HOH B:528
BINDING SITE FOR RESIDUE NAG B 201
12
BC3
SOFTWARE
ARG B:127 , HIS B:159 , ASP B:160 , HOH B:435 , LYS D:139
BINDING SITE FOR RESIDUE SO4 B 202
13
BC4
SOFTWARE
ASN C:38 , THR C:318 , NAG C:502 , HOH C:862 , LEU D:52
BINDING SITE FOR RESIDUE NAG C 501
14
BC5
SOFTWARE
THR C:40 , NAG C:501
BINDING SITE FOR RESIDUE NAG C 502
15
BC6
SOFTWARE
PRO A:324 , LYS A:326 , ASN C:81 , GLU C:119 , PHE C:120 , NAG C:504 , HOH C:852
BINDING SITE FOR RESIDUE NAG C 503
16
BC7
SOFTWARE
LYS A:326 , ILE C:121 , PHE C:174 , TYR C:257 , NAG C:503
BINDING SITE FOR RESIDUE NAG C 504
17
BC8
SOFTWARE
ASN C:165 , THR C:167 , NAG C:506 , HOH C:788 , SER E:219
BINDING SITE FOR RESIDUE NAG C 505
18
BC9
SOFTWARE
NAG C:505 , BMA C:507 , PRO E:221 , TRP E:222
BINDING SITE FOR RESIDUE NAG C 506
19
CC1
SOFTWARE
NAG C:506
BINDING SITE FOR RESIDUE BMA C 507
20
CC2
SOFTWARE
SER C:45 , ASN C:285 , VAL C:297 , NAG C:509 , HOH C:689 , HOH C:711 , HOH C:726 , HOH C:908
BINDING SITE FOR RESIDUE NAG C 508
21
CC3
SOFTWARE
LYS C:299 , NAG C:508
BINDING SITE FOR RESIDUE NAG C 509
22
CC4
SOFTWARE
LYS C:92 , ASP C:271 , PRO C:273 , HOH C:651 , HOH C:683 , HOH C:846
BINDING SITE FOR RESIDUE GOL C 510
23
CC5
SOFTWARE
ALA D:147 , GLU D:150 , ASN D:154 , THR D:156 , NAG D:202 , HOH D:508
BINDING SITE FOR RESIDUE NAG D 201
24
CC6
SOFTWARE
NAG D:201
BINDING SITE FOR RESIDUE NAG D 202
25
CC7
SOFTWARE
TRP D:14 , GLU D:15 , GLY D:16 , ARG D:25 , HOH D:489 , HOH D:519
BINDING SITE FOR RESIDUE SO4 D 203
26
CC8
SOFTWARE
ARG D:127 , HIS D:159 , ASP D:160 , HOH D:462 , LYS F:139
BINDING SITE FOR RESIDUE SO4 D 204
27
CC9
SOFTWARE
ASN E:38 , THR E:40 , THR E:318 , HOH E:895
BINDING SITE FOR RESIDUE NAG E 501
28
DC1
SOFTWARE
GLN E:80 , ASN E:81 , PHE E:120 , ILE E:121 , HOH E:931
BINDING SITE FOR RESIDUE NAG E 502
29
DC2
SOFTWARE
SER A:219 , HOH A:595 , ASN E:165 , THR E:167 , NAG E:504 , HOH E:761
BINDING SITE FOR RESIDUE NAG E 503
30
DC3
SOFTWARE
PRO A:221 , TRP A:222 , HOH A:595 , THR E:167 , NAG E:503 , BMA E:505
BINDING SITE FOR RESIDUE NAG E 504
31
DC4
SOFTWARE
NAG E:504 , MAN E:506 , MAN E:507
BINDING SITE FOR RESIDUE BMA E 505
32
DC5
SOFTWARE
BMA E:505
BINDING SITE FOR RESIDUE MAN E 506
33
DC6
SOFTWARE
BMA E:505
BINDING SITE FOR RESIDUE MAN E 507
34
DC7
SOFTWARE
SER E:45 , ASN E:285 , VAL E:297 , NAG E:509 , HOH E:703 , HOH E:836 , HOH E:863 , HOH E:962
BINDING SITE FOR RESIDUE NAG E 508
35
DC8
SOFTWARE
NAG E:508 , GLU F:69
BINDING SITE FOR RESIDUE NAG E 509
36
DC9
SOFTWARE
ARG A:224 , HOH A:830 , ARG E:207 , ARG E:208 , HOH E:733 , HOH E:781 , HOH E:949
BINDING SITE FOR RESIDUE SO4 E 510
37
EC1
SOFTWARE
ARG E:90 , LYS E:92 , ASP E:271 , PRO E:273 , HOH E:680 , HOH E:696
BINDING SITE FOR RESIDUE GOL E 511
38
EC2
SOFTWARE
ALA F:147 , GLU F:150 , ASN F:154 , THR F:156 , HOH F:433
BINDING SITE FOR RESIDUE NAG F 201
39
EC3
SOFTWARE
LYS B:139 , ARG F:127 , HIS F:159 , ASP F:160
BINDING SITE FOR RESIDUE SO4 F 202
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d4fnka_ (A:)
1b: SCOP_d4fnkc_ (C:)
1c: SCOP_d4fnke_ (E:)
2a: SCOP_d4fnkb_ (B:)
2b: SCOP_d4fnkd_ (D:)
2c: SCOP_d4fnkf_ (F:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d4fnka_
A:
1b
d4fnkc_
C:
1c
d4fnke_
E:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d4fnkb_
B:
2b
d4fnkd_
D:
2c
d4fnkf_
F:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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